Rmu_sc0001891.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001891.1
OG0001602
Physical Location & Seq
Forward (+)
104822 .. 105190
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001891.1_g000019.1.cds

Sequence Viewer

Length: 369 bp
atggttggacaaatgctaactcttcatggaataatcaggaagcgttcaactcatggcgtgcagccttatcaagtccctatgtataatccttatcatcatgatattgattcatttatgtggccatcataccaagagcaagcaccaatcctcttggttgatccaatgaagccctcccttgaggcaattgtacaaaaagttgcaaaaagtgcggaagaattatcaaggaatatggacaaagccgtggagaatattgagcgacatgtccagcaaattattaatgctttgaaccaagaaacagaggagtgggaaacgcattcttgtgttcaagagtcatatcatgaggtgttgacgagtgaggaagaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.2

Weight (kDa)

4.93

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 119
AfaI GTAC 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 48, 286, 326
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 61
AseI ATTAAT 1 cut(s) 276
BalI TGGCCA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 121
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 121
BspHI TCATGA 2 cut(s) 97, 337
BspPI GGATC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 59, 138
BstDSI CCRYGG 1 cut(s) 240
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 59, 138
CciI TCATGA 2 cut(s) 97, 337
Csp6I GTAC 1 cut(s) 188
CviAII CATG 5 cut(s) 26, 53, 98, 260, 338
CviJI RGCY 4 cut(s) 64, 121, 169, 239
CviKI_1 RGCY 4 cut(s) 64, 121, 169, 239
CviQI GTAC 1 cut(s) 188
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 5 cut(s) 29, 56, 101, 263, 341
FaqI GGGAC 1 cut(s) 59
FatI CATG 5 cut(s) 25, 52, 97, 259, 337
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 121
Hin1II CATG 5 cut(s) 29, 56, 101, 263, 341
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 2 cut(s) 107, 329
Hpy166II GTNNAC 1 cut(s) 348
Hpy188III TCNNGA 4 cut(s) 37, 98, 326, 338
Hpy8I GTNNAC 1 cut(s) 348
HpyCH4V TGCA 2 cut(s) 61, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 5 cut(s) 29, 56, 101, 263, 341
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 22, 278
Lsp1109I GCAGC 1 cut(s) 73
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 14, 224
MfeI CAATTG 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 3 cut(s) 183, 215, 270
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 6 cut(s) 158, 172, 181, 292, 334, 349
Mox20I TGGCCA 1 cut(s) 121
MscI TGGCCA 1 cut(s) 121
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 2 cut(s) 115, 318
Msp20I TGGCCA 1 cut(s) 121
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 157
NlaIII CATG 5 cut(s) 29, 56, 101, 263, 341
NspI RCATGY 1 cut(s) 263
PagI TCATGA 2 cut(s) 97, 337
PciI ACATGT 1 cut(s) 259
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PscI ACATGT 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 276
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 2 cut(s) 115, 318
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 1 cut(s) 338
SetI ASST 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 115, 318
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 183, 215, 270
SsiI CCGC 1 cut(s) 209
SspI AATATT 1 cut(s) 250
TasI AATT 3 cut(s) 183, 215, 270
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 14, 99, 179
VspI ATTAAT 1 cut(s) 276
XceI RCATGY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.