Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

53609718 .. 53614387

Gene Structure 4670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTAACTTTAGAGGAGTTCCCAACAACTACGGCTTTGGATCAGCCTCAAGATGAGTTCAATGATTCAAGCTATGTTGAGGATGAAATAAGGGATTTGGATGAGTCTTATGAAGAGCAACGCAATGTTGAGACATGTGAGGACTACGAACTATGTTGCATAACCGAGCTTGAAAAATGGGAAATGGAAGATCCCTTTGATGATGATGAAGATGAATCCTATCAAGGAGGAAGTAAGGATGAGCTTCATGCAAATGTGTCCCAAGTGCCTGAAACAATCATGTTACCTTATGAAGATCCAAAATCTTACGAGACCATAATGGAGGATTGCTTAAAAGAGGAGTCCATCAAGGCTTCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCACATGATTCTTCAGCGCCTCATTCAAGCTCTACACATGTTCTCCCCATCCAAGCAACGTTTGAGTTTGTTGATCATGCGGAGATGGTGATATGTGAGCACCTCAAATCTGATAAGGAGGTCATTCTTGCTGTGATTGTTAAACTTAAGAAAAGATGGAGACAACGGAAGAGGAGAAAGGAAAAGAGGAGCATCAAATCTCATTTTTCCATTGCTCCCAAGTTACCTAAGTTACTTGCAAGGGACCATGCAATATCTTTGAAGAAGCTTAAGCATCTAATCGAACCGCGGCCTAAACCTCCTGATTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

27.17

Weight (kDa)

4.93

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	679
AciI	CCGC	3 cut(s)	470, 677, 679
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	3 cut(s)	48, 185, 290
AcuI	CTGAAG	1 cut(s)	387
AflII	CTTAAG	2 cut(s)	536, 659
AflIII	ACRYGT	2 cut(s)	134, 427
AgsI	TTSAA	5 cut(s)	61, 69, 173, 417, 652
AluBI	AGCT	5 cut(s)	72, 169, 244, 420, 658
AluI	AGCT	5 cut(s)	72, 169, 244, 420, 658
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	3 cut(s)	125, 305, 544
AlwI	GGATC	3 cut(s)	48, 185, 290
AoxI	GGCC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	365, 634
AsuHPI	GGTGA	1 cut(s)	490
AsuNHI	GCTAGC	1 cut(s)	376
AvaII	GGWCC	2 cut(s)	365, 634
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	492
BccI	CCATC	4 cut(s)	353, 446, 469, 540
BceAI	ACGGC	1 cut(s)	48
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	125, 305, 544
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	410
BfrI	CTTAAG	2 cut(s)	536, 659
BisI	GCNGC	1 cut(s)	680
BlsI	GCNGC	1 cut(s)	681
Bme18I	GGWCC	2 cut(s)	365, 634
BmgT120I	GGNCC	2 cut(s)	365, 634
BmiI	GGNNCC	1 cut(s)	635
BmsI	GCATC	2 cut(s)	591, 673
BmtI	GCTAGC	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bse3DI	GCAATG	2 cut(s)	130, 600
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	4 cut(s)	88, 106, 244, 438
BseMI	GCAATG	2 cut(s)	130, 600
BseRI	GAGGAG	4 cut(s)	29, 353, 577, 592
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	244, 647
BsmAI	GTCTC	3 cut(s)	125, 305, 544
BsmFI	GGGAC	2 cut(s)	244, 647
BsnI	GGCC	1 cut(s)	682
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	40, 190, 295, 463
BspACI	CCGC	3 cut(s)	470, 677, 679
BspANI	GGCC	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	635
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	3 cut(s)	48, 185, 290
BspQI	GCTCTTC	1 cut(s)	108
BspTI	CTTAAG	2 cut(s)	536, 659
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	130, 600
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	4 cut(s)	40, 190, 295, 463
Bst6I	CTCTTC	2 cut(s)	108, 554
BstAFI	CTTAAG	2 cut(s)	536, 659
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	4 cut(s)	88, 106, 244, 438
BstFNI	CGCG	1 cut(s)	679
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	4 cut(s)	43, 193, 298, 466
BstMAI	GTCTC	3 cut(s)	125, 305, 544
BstMBI	GATC	4 cut(s)	40, 190, 295, 463
BstNSI	RCATGY	2 cut(s)	138, 431
BstUI	CGCG	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	190, 295
BstYI	RGATCY	2 cut(s)	190, 295
BsuRI	GGCC	1 cut(s)	682
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	4 cut(s)	88, 106, 244, 438
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	365, 634
Cfr42I	CCGCGG	1 cut(s)	680
CviAII	CATG	8 cut(s)	135, 248, 280, 383, 395, 428, 467, 638
CviJI	RGCY	9 cut(s)	35, 46, 72, 169, 244, 353, 420, 658, 682
CviKI_1	RGCY	9 cut(s)	35, 46, 72, 169, 244, 353, 420, 658, 682
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	4 cut(s)	42, 192, 297, 465
DpnII	GATC	4 cut(s)	40, 190, 295, 463
Eam1104I	CTCTTC	2 cut(s)	108, 554
EarI	CTCTTC	2 cut(s)	108, 554
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	365, 634
Eco57I	CTGAAG	1 cut(s)	387
FaeI	CATG	8 cut(s)	138, 251, 283, 386, 398, 431, 470, 641
FaqI	GGGAC	2 cut(s)	244, 647
FatI	CATG	8 cut(s)	134, 247, 279, 382, 394, 427, 466, 637
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	680
FokI	GGATG	4 cut(s)	95, 113, 251, 425
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	680
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	8 cut(s)	138, 251, 283, 386, 398, 431, 470, 641
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	5 cut(s)	65, 104, 215, 341, 398
HphI	GGTGA	1 cut(s)	490
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	50, 692
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	4 cut(s)	159, 251, 629, 641
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	8 cut(s)	138, 251, 283, 386, 398, 431, 470, 641
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	463
KspI	CCGCGG	1 cut(s)	680
Kzo9I	GATC	4 cut(s)	40, 190, 295, 463
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	579, 610
LpnPI	CCDG	1 cut(s)	282
LweI	GCATC	2 cut(s)	591, 673
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	4 cut(s)	4, 282, 612, 621
MalI	GATC	4 cut(s)	42, 192, 297, 465
MboI	GATC	4 cut(s)	40, 190, 295, 463
MboII	GAAGA	8 cut(s)	125, 200, 221, 305, 393, 399, 571, 664
MflI	RGATCY	2 cut(s)	190, 295
MhlI	GDGCHC	1 cut(s)	492
MlyI	GAGTC	2 cut(s)	113, 350
MseI	TTAA	5 cut(s)	332, 531, 537, 660, 703
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	679
MspCI	CTTAAG	2 cut(s)	536, 659
MvnI	CGCG	1 cut(s)	679
NdeII	GATC	4 cut(s)	40, 190, 295, 463
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	8 cut(s)	138, 251, 283, 386, 398, 431, 470, 641
NlaIV	GGNNCC	1 cut(s)	635
NspI	RCATGY	2 cut(s)	138, 431
PciI	ACATGT	2 cut(s)	134, 427
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	65, 215, 398
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	2 cut(s)	112, 349
PpsI	GAGTC	2 cut(s)	112, 349
PscI	ACATGT	2 cut(s)	134, 427
Psp1406I	AACGTT	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	2 cut(s)	365, 634
PsuI	RGATCY	2 cut(s)	190, 295
RseI	CAYNNNNRTG	1 cut(s)	252
SacII	CCGCGG	1 cut(s)	680
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	5 cut(s)	332, 531, 537, 660, 703
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	4 cut(s)	40, 190, 295, 463
Sau96I	GGNCC	2 cut(s)	365, 634
SchI	GAGTC	2 cut(s)	113, 350
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	591, 673
Sfr303I	CCGCGG	1 cut(s)	680
SgrBI	CCGCGG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	365, 634
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	48, 536, 659
SmoI	CTYRAG	3 cut(s)	48, 536, 659
SsiI	CCGC	3 cut(s)	470, 677, 679
SspMI	CTAG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	672
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	65, 215, 398
Tru1I	TTAA	5 cut(s)	332, 531, 537, 660, 703
Tru9I	TTAA	5 cut(s)	332, 531, 537, 660, 703
TspDTI	ATGAA	6 cut(s)	99, 126, 222, 228, 236, 306
TspGWI	ACGGA	1 cut(s)	571
Vha464I	CTTAAG	2 cut(s)	536, 659
VpaK11BI	GGWCC	2 cut(s)	365, 634
XceI	RCATGY	2 cut(s)	138, 431
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.