Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

1454691 .. 1455518

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTTGGACTAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCATGGCAGCCTTATTAATGAGGAAGAAGATTGGGCAGAAGCTAATGAGCCTTTGGAGGCCAAGGTACTTATGGAGTGCCCGCCTACACCTACTACAACTTTAGGGAAGTCCCTTGAAGTCACAGCCTTACCTCAGCCTCATAATGTATTCCATGAGTCAATTTTGGATGAGGATGAGGATACAGATTTGGATGAGCCCTATGAAAAGAAACTTGAGGCTGGGACATGTGAGGATTATGTGTTACACTATACAACCGAGCTTGAAGCATATGAAGATAGTGATATTGAAGAGTCCTTGACGGACGAGGAATTTTACATTAAAGAAAGCAAGGTTCAACTTCATGCAAATGAGTACCAAGTGCCGAAAACAATCATCATAGCTCATAAAGATCAAGAATGCAAGGATGACATGGAGGATTGCTTAGAAGAGGAGTCCGGCAAATCTCCTATAGACGGGCTTCTAATTCTATCACATGCTCGACCACCGACCATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.53

Weight (kDa)

4.31

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	2 cut(s)	114, 401
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	5 cut(s)	45, 164, 311, 335, 383
AluBI	AGCT	3 cut(s)	89, 307, 428
AluI	AGCT	3 cut(s)	89, 307, 428
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	356
AseI	ATTAAT	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	4 cut(s)	220, 226, 244, 457
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	34, 483
BslFI	GGGAC	2 cut(s)	142, 283
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	142, 283
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	128, 246
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	3 cut(s)	27, 330, 468
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	180, 469
BstF5I	GGATG	4 cut(s)	220, 226, 244, 457
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstNSI	RCATGY	2 cut(s)	276, 524
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	4 cut(s)	220, 226, 244, 457
Cac8I	GCNNGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	113, 400
CviAII	CATG	7 cut(s)	26, 50, 200, 273, 389, 457, 521
CviQI	GTAC	2 cut(s)	113, 400
DdeI	CTNAG	2 cut(s)	180, 469
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	27, 330, 468
EarI	CTCTTC	3 cut(s)	27, 330, 468
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	7 cut(s)	29, 53, 203, 276, 392, 460, 524
FaqI	GGGAC	2 cut(s)	142, 283
FatI	CATG	7 cut(s)	25, 49, 199, 272, 388, 456, 520
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	4 cut(s)	227, 233, 251, 464
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	34, 483
Hin1II	CATG	7 cut(s)	29, 53, 203, 276, 392, 460, 524
HinfI	GANTC	4 cut(s)	30, 203, 338, 479
HpaII	CCGG	2 cut(s)	34, 483
Hpy188III	TCNNGA	2 cut(s)	34, 440
HpyCH4V	TGCA	2 cut(s)	392, 447
HpyF3I	CTNAG	2 cut(s)	180, 469
Hsp92II	CATG	7 cut(s)	29, 53, 203, 276, 392, 460, 524
Kpn2I	TCCGGA	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	436
LpnPI	CCDG	3 cut(s)	47, 252, 496
Lsp1109I	GCAGC	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	166, 288
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	6 cut(s)	14, 83, 86, 332, 347, 485
MhlI	GDGCHC	2 cut(s)	128, 246
MluCI	AATT	3 cut(s)	207, 356, 510
MlyI	GAGTC	3 cut(s)	212, 347, 488
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	2 cut(s)	63, 366
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	2 cut(s)	34, 483
Mva1269I	GAATGC	1 cut(s)	449
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	7 cut(s)	29, 53, 203, 276, 392, 460, 524
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	276, 524
PciI	ACATGT	1 cut(s)	272
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	3 cut(s)	211, 346, 487
PpsI	GAGTC	3 cut(s)	211, 346, 487
PscI	ACATGT	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	266
RsaI	GTAC	2 cut(s)	114, 401
RsaNI	GTAC	2 cut(s)	113, 400
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	63, 366
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	436
SchI	GAGTC	3 cut(s)	212, 347, 488
SduI	GDGCHC	2 cut(s)	128, 246
SetI	ASST	7 cut(s)	91, 114, 139, 181, 309, 381, 430
SfcI	CTRYAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	207, 356, 510
SsiI	CCGC	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	1 cut(s)	526
TasI	AATT	3 cut(s)	207, 356, 510
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	63, 366
Tru9I	TTAA	2 cut(s)	63, 366
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	14, 264, 333, 377
TspGWI	ACGGA	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	2 cut(s)	276, 524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.