Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

27326707 .. 27327606

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTTGGTCATTCAGCGGAGACATGTACAAGCATCCGGTATGAAGGATACTATGGTCAAAATACCATGCTTGGAGGATTTCAAGACAACCAAGGGCATTGGAATAATTACTATTCACCTCCATACAGTCCAGCATGGGATAACTCTCCATATTCTTCATGGAACAACAATCCAAAAATGCAGCAAGGATCTTTCAATGCGTTTGATGCTTCCCTATGTTCATACCATGATTATAGGCCACAAGCACCTCCACCTCAAAACTCAGGTATGTCTAATAATTATGATGAGATGATTAAGGCTCTAAATGCTGCAACTCAAGCCGTGATTCAGGAACAGCAAGCTTTGGATGCTTCTATACGGCGAGCTCGTGAGAATGGTGATGATTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTTATATCTCAAGAGCACCCTTCTACACCGATGGTAACTTTAGAGGAGTTCCCAACAACTATGGCTTTGGATCAACCTCAAGATGCATTCAATGATTCAAGCTATGATGAGGATGAAATAAGGGATTTGGATGAGTCTTATGAAGAGCAACGCAATATCGAGACATGTGAGGACTACGAACTATGTTGCATAACCGAGCTTGAAAAATGGGAAATGGAAGATCCCTTTGATGATGATGATGATGATGAATCCTATCATGGAGGAAGTAAGGATGAGCTTCATGCAAATGTGTCCCAAGTGCCTGAAACAATCATATTACCTTATGAAGATCCAAAATGTTACGAGACCACAATGGAGGATTGCTTAAAAGAGAGTCCATCAAGGCTTCTACATTTGGACTTTTATTGCCGGCACATGGAAGACCACATGATTCTTCGCGCCTCATTCAAGCTCTACACATGTTCTCCCCATCCAAGCAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag rve

Protein Analysis

299

Amino Acids

34.66

Weight (kDa)

4.26

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	852
AciI	CCGC	1 cut(s)	17
AclI	AACGTT	1 cut(s)	894
AclWI	GGATC	4 cut(s)	196, 492, 629, 737
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	829
AflIII	ACRYGT	3 cut(s)	23, 578, 872
AgsI	TTSAA	6 cut(s)	83, 196, 505, 513, 617, 862
AluBI	AGCT	6 cut(s)	341, 365, 516, 613, 691, 865
AluI	AGCT	6 cut(s)	341, 365, 516, 613, 691, 865
Alw21I	GWGCWC	2 cut(s)	367, 432
Alw26I	GTCTC	4 cut(s)	14, 404, 569, 752
AlwI	GGATC	4 cut(s)	196, 492, 629, 737
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	181, 308
AspLEI	GCGC	1 cut(s)	854
AsuHPI	GGTGA	2 cut(s)	108, 389
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	367, 432
BbvI	GCAGC	2 cut(s)	193, 295
BccI	CCATC	3 cut(s)	439, 799, 891
BceAI	ACGGC	2 cut(s)	305, 374
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	4 cut(s)	14, 404, 569, 752
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	182, 309
BlsI	GCNGC	2 cut(s)	183, 310
BmsI	GCATC	4 cut(s)	42, 196, 337, 487
BpiI	GAAGAC	1 cut(s)	840
BpuEI	CTTGAG	3 cut(s)	300, 408, 477
BsaI	GGTCTC	2 cut(s)	404, 752
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	862, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse118I	RCCGGY	1 cut(s)	822
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	6 cut(s)	33, 352, 532, 550, 691, 883
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	193, 295
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	367, 432
BsiSI	CCGG	2 cut(s)	37, 823
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	4 cut(s)	14, 404, 569, 752
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	238
Bso31I	GGTCTC	2 cut(s)	404, 752
Bsp1286I	GDGCHC	2 cut(s)	367, 432
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	188, 484, 634, 742
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	852
BspPI	GGATC	4 cut(s)	196, 492, 629, 737
BspQI	GCTCTTC	1 cut(s)	552
BspTNI	GGTCTC	2 cut(s)	404, 752
BsrFI	RCCGGY	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	822
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	4 cut(s)	188, 484, 634, 742
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	552
BstAUI	TGTACA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	339, 363, 824
BstDEI	CTNAG	1 cut(s)	262
BstF5I	GGATG	6 cut(s)	33, 352, 532, 550, 691, 883
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	4 cut(s)	191, 487, 637, 745
BstMAI	GTCTC	4 cut(s)	14, 404, 569, 752
BstMBI	GATC	4 cut(s)	188, 484, 634, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 305, 317, 347
BstNSI	RCATGY	3 cut(s)	27, 582, 876
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	193, 295
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	3 cut(s)	188, 634, 742
BstYI	RGATCY	3 cut(s)	188, 634, 742
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	6 cut(s)	33, 352, 532, 550, 691, 883
Cac8I	GCNNGC	3 cut(s)	339, 363, 824
CfoI	GCGC	1 cut(s)	854
Cfr10I	RCCGGY	1 cut(s)	822
Csp6I	GTAC	1 cut(s)	27
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	4 cut(s)	190, 486, 636, 744
DpnII	GATC	4 cut(s)	188, 484, 634, 742
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	2 cut(s)	404, 752
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	91
FaqI	GGGAC	1 cut(s)	691
Fnu4HI	GCNGC	2 cut(s)	182, 309
FokI	GGATG	6 cut(s)	20, 359, 539, 557, 698, 870
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	182, 309
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	2 cut(s)	182, 309
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	2 cut(s)	37, 823
HhaI	GCGC	1 cut(s)	854
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	6 cut(s)	325, 509, 548, 662, 787, 844
HpaII	CCGG	2 cut(s)	37, 823
HphI	GGTGA	2 cut(s)	108, 389
Hpy188III	TCNNGA	6 cut(s)	83, 329, 368, 425, 494, 574
HpyAV	CCTTC	2 cut(s)	38, 444
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	5 cut(s)	181, 311, 500, 603, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 305, 317, 347
HpyF3I	CTNAG	1 cut(s)	262
HpySE526I	ACGT	1 cut(s)	894
HspAI	GCGC	1 cut(s)	852
KroI	GCCGGC	1 cut(s)	822
KroNI	GCCGGC	1 cut(s)	824
Kzo9I	GATC	4 cut(s)	188, 484, 634, 742
LguI	GCTCTTC	1 cut(s)	552
LpnPI	CCDG	6 cut(s)	50, 144, 249, 314, 729, 836
Lsp1109I	GCAGC	2 cut(s)	193, 295
LweI	GCATC	4 cut(s)	42, 196, 337, 487
MaeII	ACGT	1 cut(s)	894
MaeIII	GTNAC	2 cut(s)	448, 752
MalI	GATC	4 cut(s)	190, 486, 636, 744
MboI	GATC	4 cut(s)	188, 484, 634, 742
MboII	GAAGA	6 cut(s)	147, 569, 644, 752, 839, 845
MflI	RGATCY	3 cut(s)	188, 634, 742
MhlI	GDGCHC	2 cut(s)	367, 432
MluCI	AATT	2 cut(s)	106, 277
MlyI	GAGTC	2 cut(s)	557, 796
Mph1103I	ATGCAT	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	822
MseI	TTAA	2 cut(s)	294, 779
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	37, 823
Mva1269I	GAATGC	1 cut(s)	500
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	4 cut(s)	206, 305, 317, 347
NaeI	GCCGGC	1 cut(s)	824
NdeII	GATC	4 cut(s)	188, 484, 634, 742
NgoMIV	GCCGGC	1 cut(s)	822
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	3 cut(s)	27, 582, 876
PciI	ACATGT	3 cut(s)	23, 578, 872
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PctI	GAATGC	1 cut(s)	500
PdiI	GCCGGC	1 cut(s)	824
PfeI	GAWTC	4 cut(s)	325, 509, 662, 844
PkrI	GCNGC	2 cut(s)	183, 310
PleI	GAGTC	2 cut(s)	556, 795
PpsI	GAGTC	2 cut(s)	556, 795
PscI	ACATGT	3 cut(s)	23, 578, 872
Psp124BI	GAGCTC	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	894
PsuI	RGATCY	3 cut(s)	188, 634, 742
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	294, 779
SatI	GCNGC	2 cut(s)	182, 309
Sau3AI	GATC	4 cut(s)	188, 484, 634, 742
SchI	GAGTC	2 cut(s)	557, 796
SduI	GDGCHC	2 cut(s)	367, 432
SfaNI	GCATC	4 cut(s)	42, 196, 337, 487
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	3 cut(s)	315, 423, 492
SmoI	CTYRAG	3 cut(s)	315, 423, 492
Sse9I	AATT	2 cut(s)	106, 277
SsiI	CCGC	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	1 cut(s)	573
TasI	AATT	2 cut(s)	106, 277
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	325, 509, 662, 844
Tru1I	TTAA	2 cut(s)	294, 779
Tru9I	TTAA	2 cut(s)	294, 779
TseI	GCWGC	2 cut(s)	181, 308
TspDTI	ATGAA	8 cut(s)	57, 147, 210, 543, 570, 675, 683, 753
XceI	RCATGY	3 cut(s)	27, 582, 876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.