Rh4AG014900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001602
Physical Location & Seq
Reverse (-)
2939600 .. 2939917
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG014900.1

Sequence Viewer

Length: 318 bp
ATGTGGGAGGATCCCAACTCAAGCATTTACAACAATGGTTGGACTAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCCTGGCAGCCTTATCAAGTCCCTATGTATGATCCTTATCAACACAATATGGATTCATTCATGTGGCCGTCATACCAAGATCAAGTACCAATCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTACAAAAAGTTGCGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAGAATATTGAGCGACATATCCAGCAAATTATTAATTCTTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.28

Weight (kDa)

4.49

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 1 cut(s) 236
AclWI GGATC 4 cut(s) 5, 18, 107, 179
AcoI YGGCCR 1 cut(s) 146
AfaI GTAC 2 cut(s) 168, 216
AgsI TTSAA 2 cut(s) 79, 313
AjnI CCWGG 1 cut(s) 83
AlwI GGATC 4 cut(s) 5, 18, 107, 179
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 88
AseI ATTAAT 1 cut(s) 303
BamHI GGATCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 133, 251
BciT130I CCWGG 1 cut(s) 85
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 4, 224
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 148
Bsp13I TCCGGA 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 4 cut(s) 10, 112, 160, 184
BspACI CCGC 1 cut(s) 236
BspANI GGCC 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 4 cut(s) 5, 18, 107, 179
BsrGI TGTACA 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 4 cut(s) 10, 112, 160, 184
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 267
BstKTI GATC 4 cut(s) 13, 115, 163, 187
BstMBI GATC 4 cut(s) 10, 112, 160, 184
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 267
Csp6I GTAC 2 cut(s) 167, 215
CviAII CATG 2 cut(s) 60, 142
CviJI RGCY 4 cut(s) 91, 148, 196, 266
CviKI_1 RGCY 4 cut(s) 91, 148, 196, 266
CviQI GTAC 2 cut(s) 167, 215
DpnI GATC 4 cut(s) 12, 114, 162, 186
DpnII GATC 4 cut(s) 10, 112, 160, 184
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 83
FaeI CATG 2 cut(s) 63, 145
FaiI YATR 8 cut(s) 61, 107, 111, 131, 143, 154, 257, 288
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 59, 141
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 148
HapII CCGG 1 cut(s) 68
Hin1II CATG 2 cut(s) 63, 145
HinfI GANTC 3 cut(s) 64, 134, 242
HpaII CCGG 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92II CATG 2 cut(s) 63, 145
Kpn2I TCCGGA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 10, 112, 160, 184
LpnPI CCDG 4 cut(s) 70, 81, 97, 305
Lsp1109I GCAGC 1 cut(s) 100
MalI GATC 4 cut(s) 12, 114, 162, 186
MboI GATC 4 cut(s) 10, 112, 160, 184
MboII GAAGA 2 cut(s) 48, 251
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 210, 297, 304
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 3 cut(s) 185, 199, 208
MroI TCCGGA 1 cut(s) 67
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 4 cut(s) 10, 112, 160, 184
NlaIII CATG 2 cut(s) 63, 145
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 64, 134, 242
PkrI GCNGC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 168, 216
RsaNI GTAC 2 cut(s) 167, 215
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 4 cut(s) 10, 112, 160, 184
ScrFI CCNGG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 19, 203
SmoI CTYRAG 2 cut(s) 19, 203
Sse9I AATT 3 cut(s) 210, 297, 304
SsiI CCGC 1 cut(s) 236
SspI AATATT 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 83
TasI AATT 3 cut(s) 210, 297, 304
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 3 cut(s) 64, 134, 242
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 48, 126, 130, 206
VspI ATTAAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.