Rroxscaffold_3G00235300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001602
Physical Location & Seq
Forward (+)
22222874 .. 22226744
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235300.1

Sequence Viewer

Length: 1281 bp
ATGGAAACACCGCCAAATAGGCTATCACCTGAGCTCCTACTCAGTCAGAGATCACCGCTTACGCACCACAACGCACCGCGCCAAGATCACCTCGCCGAAGCATCGTGCCGGGAACCGAAGCACATCGGTCCCACATCCAAAACAAGGAAGATATCGGTCTCTCCCCCACCTATAAAAGGATACTATGATCAAAATACCATGCTTGGATTTCAAGACAACCAAAGGGATTGGAATAATTACTATTCACCTCCATACAATCCGGCATGGGATAATCCTCCTTATTCTTCGTGGAATCATAATCCAAACATGCAACAAGGATCTTTCAATGAGTTTGACGCTTCCCCATATTCATACCATGATTATACGCCACATGTACCACCTCTTCATAACTTAGGTATGTCTAATAATTATGATGAGATTATTAAGGCTCTAAATGCTTCTACTCAAGCTTTGATTCAGGAACAGCAAGCTTTGGATGCTTCTATGCAAGCTTTGATTCAGGAACAGCAAGCTCGTGAGGAGGATGGTGATTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTCATATCTCAGGAGCACCCTCCCGCACCGATGACAACTTTAGGGGAGCTCTCAACAACTACAGTTTTAGGTCAACCTCATGATGCATTCCATGATTCAACATTTGATGAGGATGTAGTAAGAGATTTGGATGAGTATTATGAAGAGCAACGCAATGTTCAGATTTGTGAGGATCACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCATTTGATGATGAGGAATCCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTGAAACAATCATGTTACCTAATGAAGATCCAAAAGGATATGAGGCCACAAGGGAGAATTGCTTAAAAGAGGAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCATCTGATCCTACAACGCCTCATTCAACCTCTACACATGTTCTCCACATCCAACCAATGGTTGAGTTTGTTGACCATGTGGAGATGGTCACAAGTGAACATCTCAAATCACATAAGGAGATCATTGTAGCCGTGATTGTTGAACTTAAGAGAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCATTGCTCCCAAGTTACCTAAGTTGCTAGAAAGGGCCCATGAAACATCTTTGAAGAAGCTTAAGCATCTGATCGAACCGCGGCCTAAACCTCCCGATTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

49.41

Weight (kDa)

5.48

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccII CGCG 2 cut(s) 79, 1255
AciI CCGC 6 cut(s) 11, 56, 77, 585, 1253, 1255
AclWI GGATC 5 cut(s) 325, 741, 767, 866, 968
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 4 cut(s) 144, 176, 938, 1024
AflII CTTAAG 2 cut(s) 1112, 1235
AflIII ACRYGT 2 cut(s) 370, 1003
AgsI TTSAA 7 cut(s) 212, 325, 660, 755, 993, 1109, 1228
Alw21I GWGCWC 3 cut(s) 36, 579, 612
Alw26I GTCTC 3 cut(s) 163, 551, 1120
AlwI GGATC 5 cut(s) 325, 741, 767, 866, 968
AoxI GGCC 3 cut(s) 888, 1209, 1256
ApaI GGGCCC 1 cut(s) 1213
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 4 cut(s) 128, 941, 1209, 1210
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 5 cut(s) 18, 45, 80, 237, 539
AsuNHI GCTAGC 1 cut(s) 952
AvaII GGWCC 2 cut(s) 128, 941
BaeGI GKGCMC 2 cut(s) 837, 1213
BanII GRGCYC 3 cut(s) 36, 612, 1213
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BauI CACGAG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 970
Bbv12I GWGCWC 3 cut(s) 36, 579, 612
BccI CCATC 4 cut(s) 518, 929, 976, 1045
BceAI ACGGC 1 cut(s) 1082
BciVI GTATCC 1 cut(s) 173
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 163, 551, 1120
BfaI CTAG 2 cut(s) 953, 1202
BfmI CTRYAG 1 cut(s) 621
BfrI CTTAAG 2 cut(s) 1112, 1235
BfuI GTATCC 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 19
BisI GCNGC 1 cut(s) 1256
BlsI GCNGC 1 cut(s) 1257
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 128, 941
BmgT120I GGNCC 4 cut(s) 128, 941, 1209, 1210
BmiI GGNNCC 3 cut(s) 114, 130, 1211
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 5 cut(s) 110, 466, 634, 1167, 1249
BmtI GCTAGC 1 cut(s) 956
BpiI GAAGAC 1 cut(s) 970
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 2 cut(s) 163, 551
BsaJI CCNNGG 1 cut(s) 1253
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 993, 1023
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 176, 938, 1024
Bse3DI GCAATG 2 cut(s) 721, 1176
BseDI CCNNGG 1 cut(s) 1253
BseGI GGATG 7 cut(s) 134, 481, 529, 679, 697, 820, 1014
BseLI CCNNNNNNNGG 4 cut(s) 144, 176, 938, 1024
BseMI GCAATG 2 cut(s) 721, 1176
BseMII CTCAG 3 cut(s) 21, 55, 584
BseRI GAGGAG 2 cut(s) 533, 929
BseSI GKGCMC 2 cut(s) 837, 1213
Bsh1236I CGCG 2 cut(s) 79, 1255
BshFI GGCC 3 cut(s) 890, 1211, 1258
BsiHKAI GWGCWC 3 cut(s) 36, 579, 612
BsiSI CCGG 2 cut(s) 109, 260
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 4 cut(s) 144, 176, 938, 1024
BsmAI GTCTC 3 cut(s) 163, 551, 1120
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 3 cut(s) 890, 1211, 1258
Bso31I GGTCTC 2 cut(s) 163, 551
Bsp120I GGGCCC 1 cut(s) 1209
Bsp1286I GDGCHC 5 cut(s) 36, 579, 612, 837, 1213
BspACI CCGC 6 cut(s) 11, 56, 77, 585, 1253, 1255
BspANI GGCC 3 cut(s) 890, 1211, 1258
BspCNI CTCAG 3 cut(s) 22, 54, 583
BspFNI CGCG 2 cut(s) 79, 1255
BspHI TCATGA 2 cut(s) 640, 799
BspLI GGNNCC 3 cut(s) 114, 130, 1211
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 5 cut(s) 325, 741, 767, 866, 968
BspQI GCTCTTC 1 cut(s) 699
BspTI CTTAAG 2 cut(s) 1112, 1235
BspTNI GGTCTC 2 cut(s) 163, 551
BsrDI GCAATG 2 cut(s) 721, 1176
BssECI CCNNGG 1 cut(s) 1253
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 625
Bst6I CTCTTC 3 cut(s) 387, 699, 1133
BstAFI CTTAAG 2 cut(s) 1112, 1235
BstC8I GCNNGC 4 cut(s) 468, 489, 510, 954
BstDEI CTNAG 5 cut(s) 30, 41, 391, 570, 1194
BstDSI CCRYGG 1 cut(s) 1253
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 7 cut(s) 134, 481, 529, 679, 697, 820, 1014
BstFNI CGCG 2 cut(s) 79, 1255
BstHHI GCGC 1 cut(s) 81
BstMAI GTCTC 3 cut(s) 163, 551, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 19, 434, 476, 841
BstNSI RCATGY 3 cut(s) 310, 374, 1007
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 2 cut(s) 837, 1213
BstUI CGCG 2 cut(s) 79, 1255
BstV2I GAAGAC 1 cut(s) 970
BstX2I RGATCY 3 cut(s) 317, 772, 871
BstYI RGATCY 3 cut(s) 317, 772, 871
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 3 cut(s) 890, 1211, 1258
BtgI CCRYGG 1 cut(s) 1253
BtsCI GGATG 7 cut(s) 134, 481, 529, 679, 697, 820, 1014
Cac8I GCNNGC 4 cut(s) 468, 489, 510, 954
CciI TCATGA 2 cut(s) 640, 799
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 128, 941, 1209, 1210
Cfr42I CCGCGG 1 cut(s) 1256
CseI GACGC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 374
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 5 cut(s) 30, 41, 391, 570, 1194
Eam1104I CTCTTC 3 cut(s) 387, 699, 1133
EarI CTCTTC 3 cut(s) 387, 699, 1133
Ecl136II GAGCTC 2 cut(s) 34, 610
Eco24I GRGCYC 3 cut(s) 36, 612, 1213
Eco31I GGTCTC 2 cut(s) 163, 551
Eco32I GATATC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 128, 941
Eco53kI GAGCTC 2 cut(s) 34, 610
EcoICRI GAGCTC 2 cut(s) 34, 610
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 1209
EcoRV GATATC 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 3 cut(s) 36, 612, 1213
FaqI GGGAC 1 cut(s) 114
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 1256
FokI GGATG 7 cut(s) 121, 488, 536, 686, 704, 827, 1001
FriOI GRGCYC 3 cut(s) 36, 612, 1213
Fsp4HI GCNGC 1 cut(s) 1256
FspBI CTAG 2 cut(s) 953, 1202
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 1256
HaeIII GGCC 3 cut(s) 890, 1211, 1258
HapII CCGG 2 cut(s) 109, 260
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 81
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 2 cut(s) 635, 1039
HindII GTYRAC 2 cut(s) 635, 1039
HindIII AAGCTT 4 cut(s) 447, 468, 489, 1232
HinfI GANTC 6 cut(s) 292, 454, 496, 656, 791, 917
HpaII CCGG 2 cut(s) 109, 260
HphI GGTGA 5 cut(s) 18, 45, 80, 237, 539
Hpy166II GTNNAC 3 cut(s) 635, 1039, 1064
Hpy188I TCNGA 4 cut(s) 48, 723, 973, 1245
Hpy188III TCNNGA 9 cut(s) 212, 458, 500, 515, 572, 641, 800, 1268, 1278
Hpy8I GTNNAC 3 cut(s) 635, 1039, 1064
HpyAV CCTTC 2 cut(s) 571, 1116
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4V TGCA 4 cut(s) 310, 487, 647, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 434, 476, 841
HpyF3I CTNAG 5 cut(s) 30, 41, 391, 570, 1194
HspAI GCGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 187
KspI CCGCGG 1 cut(s) 1256
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 5 cut(s) 39, 574, 607, 934, 1186
LpnPI CCDG 7 cut(s) 42, 122, 273, 443, 485, 557, 858
LweI GCATC 5 cut(s) 110, 466, 634, 1167, 1249
MaeI CTAG 2 cut(s) 953, 1202
MaeIII GTNAC 3 cut(s) 858, 1054, 1188
MflI RGATCY 3 cut(s) 317, 772, 871
MhlI GDGCHC 5 cut(s) 36, 579, 612, 837, 1213
MluCI AATT 3 cut(s) 235, 406, 901
MlyI GAGTC 1 cut(s) 926
MmeI TCCRAC 1 cut(s) 1042
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 4 cut(s) 423, 908, 1113, 1236
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 1255
MspCI CTTAAG 2 cut(s) 1112, 1235
MspI CCGG 2 cut(s) 109, 260
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 647
MvnI CGCG 2 cut(s) 79, 1255
MwoI GCNNNNNNNGC 4 cut(s) 19, 434, 476, 841
NciI CCSGG 1 cut(s) 110
NheI GCTAGC 1 cut(s) 952
NlaIV GGNNCC 3 cut(s) 114, 130, 1211
NmuCI GTSAC 1 cut(s) 1054
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 3 cut(s) 310, 374, 1007
PagI TCATGA 2 cut(s) 640, 799
PciI ACATGT 2 cut(s) 370, 1003
PciSI GCTCTTC 1 cut(s) 699
PctI GAATGC 1 cut(s) 647
PfeI GAWTC 5 cut(s) 292, 454, 496, 656, 791
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 1 cut(s) 1257
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PscI ACATGT 2 cut(s) 370, 1003
Psp124BI GAGCTC 2 cut(s) 36, 612
PspN4I GGNNCC 3 cut(s) 114, 130, 1211
PspOMI GGGCCC 1 cut(s) 1209
PspPI GGNCC 4 cut(s) 128, 941, 1209, 1210
PsuI RGATCY 3 cut(s) 317, 772, 871
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 828
SacI GAGCTC 2 cut(s) 36, 612
SacII CCGCGG 1 cut(s) 1256
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 4 cut(s) 423, 908, 1113, 1236
SatI GCNGC 1 cut(s) 1256
Sau96I GGNCC 4 cut(s) 128, 941, 1209, 1210
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 5 cut(s) 36, 579, 612, 837, 1213
SfaNI GCATC 5 cut(s) 110, 466, 634, 1167, 1249
SfcI CTRYAG 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 1256
SgrBI CCGCGG 1 cut(s) 1256
SinI GGWCC 2 cut(s) 128, 941
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 3 cut(s) 444, 1112, 1235
SmoI CTYRAG 3 cut(s) 444, 1112, 1235
Sse9I AATT 3 cut(s) 235, 406, 901
SsiI CCGC 6 cut(s) 11, 56, 77, 585, 1253, 1255
SspMI CTAG 2 cut(s) 953, 1202
SstI GAGCTC 2 cut(s) 36, 612
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 1248
TaqII GACCGA 3 cut(s) 116, 145, 761
TasI AATT 3 cut(s) 235, 406, 901
TauI GCSGC 1 cut(s) 1258
TfiI GAWTC 5 cut(s) 292, 454, 496, 656, 791
Tru1I TTAA 4 cut(s) 423, 908, 1113, 1236
Tru9I TTAA 4 cut(s) 423, 908, 1113, 1236
TseFI GTSAC 1 cut(s) 1054
Tsp45I GTSAC 1 cut(s) 1054
TspDTI ATGAA 8 cut(s) 339, 374, 553, 717, 812, 816, 882, 1230
Van91I CCANNNNNTGG 1 cut(s) 1024
Vha464I CTTAAG 2 cut(s) 1112, 1235
VpaK11BI GGWCC 2 cut(s) 128, 941
XagI CCTNNNNNAGG 1 cut(s) 174
XceI RCATGY 3 cut(s) 310, 374, 1007
XspI CTAG 2 cut(s) 953, 1202
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.