Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

3605291 .. 3616434

Gene Structure 11144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTTGAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAACATCTCAAATCGCATAAGGAGATCATTGTAGCCGTGATTGTTGAATTTAAGAAAAGAACGAGACAATGGAAGAAGAGAAAGAAAAAGAGCAGCATCAAATCCTATCTTTCCTTTGCTCCCATGTTACCTAAGTTGCTACCAAAGGACCATGAAACATCTTTGAAGAGGCTTAAGCATCGATCGAACTGCGACCTAAACCTACCGATTACTCTTGATGAAGAGCTGCTTTGTCGGTCGAAGACGATAAACCAATCGCTTTTTGGGAGGCAACCCAAAAAAAGTGCACTTTTCGTTCCTTCTCTCCTTTTCAACCCATCCTCACTTCTTTTGGAGTCTATATCGCATGGAGCTTACGCTAGGAAGTCAAGGACTTATGATCTTGAGGTTGGTGTCTTTATTGTCATCTCCAAAGGTCGTGAGCATGGATCTCTCGACGAGGTTTTCAGAAAAGTCCAATGGGCGGCGGCCGATAACCGGAATGTGGAGAAAGTTGGCCGGAATTTGGCGACCGGTGACCAGGCTCCAGCAAAGTCTCCTATGTTTATGATGGCCAATGATCATTGCAATCAAGGCATGAAGCAGGCCTTTAGCCATCAACTTTCCAAGAATAGGACATCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.28

Weight (kDa)

9.92

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	503, 506
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	3 cut(s)	507, 535, 591
AcsI	RAATTY	2 cut(s)	86, 541
AfiI	CCNNNNNNNGG	5 cut(s)	502, 516, 523, 544, 651
AflII	CTTAAG	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	86, 205, 352
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	2 cut(s)	265, 392
AluI	AGCT	2 cut(s)	265, 392
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	97, 579
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	4 cut(s)	507, 535, 591, 624
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	132, 265
ApoI	RAATTY	2 cut(s)	86, 541
AsiGI	ACCGGT	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	144, 252
BccI	CCATC	4 cut(s)	22, 364, 583, 642
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	2 cut(s)	16, 598
BcoDI	GTCTC	2 cut(s)	97, 579
BfaI	CTAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	212
BisI	GCNGC	4 cut(s)	133, 266, 504, 507
BlsI	GCNGC	4 cut(s)	134, 267, 505, 508
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	144, 226
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	220
BsaWI	WCCGGW	2 cut(s)	516, 551
Bsc4I	CCNNNNNNNGG	5 cut(s)	502, 516, 523, 544, 651
Bse118I	RCCGGY	1 cut(s)	551
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	560
BseCI	ATCGAT	1 cut(s)	220
BseGI	GGATG	2 cut(s)	356, 656
BseLI	CCNNNNNNNGG	5 cut(s)	502, 516, 523, 544, 651
BseMI	GCAATG	1 cut(s)	601
BseSI	GKGCMC	1 cut(s)	328
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	144, 252
Bsh1285I	CGRYCG	4 cut(s)	224, 278, 510, 552
BshFI	GGCC	4 cut(s)	509, 537, 593, 626
BshTI	ACCGGT	1 cut(s)	551
BshVI	ATCGAT	1 cut(s)	220
BsiEI	CGRYCG	4 cut(s)	224, 278, 510, 552
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	3 cut(s)	517, 538, 552
BslI	CCNNNNNNNGG	5 cut(s)	502, 516, 523, 544, 651
BsmAI	GTCTC	2 cut(s)	97, 579
BsnI	GGCC	4 cut(s)	509, 537, 593, 626
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
BspACI	CCGC	2 cut(s)	503, 506
BspANI	GGCC	4 cut(s)	509, 537, 593, 626
BspDI	ATCGAT	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	551
BssMI	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
Bst2UI	CCWGG	1 cut(s)	560
Bst6I	CTCTTC	3 cut(s)	110, 200, 255
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	356, 656
BstKTI	GATC	6 cut(s)	19, 66, 224, 421, 470, 601
BstMAI	GTCTC	2 cut(s)	97, 579
BstMBI	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
BstMCI	CGRYCG	4 cut(s)	224, 278, 510, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstNI	CCWGG	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	144, 252
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	509, 537, 593, 626
BsuTUI	ATCGAT	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	356, 656
Cac8I	GCNNGC	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	6 cut(s)	20, 163, 191, 386, 464, 616
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	6 cut(s)	18, 65, 223, 420, 469, 600
DpnII	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
EaeI	YGGCCR	3 cut(s)	507, 535, 591
EagI	CGGCCG	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	110, 200, 255
EarI	CTCTTC	3 cut(s)	110, 200, 255
EclXI	CGGCCG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	187
Eco52I	CGGCCG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	558
FaeI	CATG	6 cut(s)	23, 166, 194, 389, 467, 619
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 611, 643
FatI	CATG	6 cut(s)	19, 162, 190, 385, 463, 615
FbaI	TGATCA	2 cut(s)	16, 598
Fnu4HI	GCNGC	4 cut(s)	133, 266, 504, 507
FokI	GGATG	2 cut(s)	343, 643
Fsp4HI	GCNGC	4 cut(s)	133, 266, 504, 507
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	4 cut(s)	133, 266, 504, 507
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	4 cut(s)	509, 537, 593, 626
HapII	CCGG	3 cut(s)	517, 538, 552
Hin1II	CATG	6 cut(s)	23, 166, 194, 389, 467, 619
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	3 cut(s)	517, 538, 552
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	41, 326
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	4 cut(s)	254, 422, 458, 473
Hpy8I	GTNNAC	2 cut(s)	41, 326
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	326, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	23, 166, 194, 389, 467, 619
Ksp22I	TGATCA	2 cut(s)	16, 598
Kzo9I	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	3 cut(s)	163, 389, 568
LpnPI	CCDG	7 cut(s)	530, 545, 551, 565, 572, 579, 608
Lsp1109I	GCAGC	2 cut(s)	144, 252
LweI	GCATC	2 cut(s)	144, 226
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	165, 554
MalI	GATC	6 cut(s)	18, 65, 223, 420, 469, 600
MboI	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
MboII	GAAGA	5 cut(s)	124, 127, 217, 272, 292
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	2 cut(s)	86, 541
MluNI	TGGCCA	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	5 cut(s)	201, 300, 370, 418, 472
Mox20I	TGGCCA	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	2 cut(s)	90, 213
Msp20I	TGGCCA	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	3 cut(s)	517, 538, 552
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	612
NdeII	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
NlaIII	CATG	6 cut(s)	23, 166, 194, 389, 467, 619
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	554
PceI	AGGCCT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	255
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	134, 267, 505, 508
Ple19I	CGATCG	1 cut(s)	224
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	558
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	90, 213
SatI	GCNGC	4 cut(s)	133, 266, 504, 507
Sau3AI	GATC	6 cut(s)	16, 63, 221, 418, 467, 598
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	172, 237, 243, 267, 394, 429, 457, 483
SfaNI	GCATC	2 cut(s)	144, 226
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	212, 422
SmoI	CTYRAG	2 cut(s)	212, 422
Sse9I	AATT	2 cut(s)	86, 541
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	2 cut(s)	503, 506
SspMI	CTAG	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	558
TaqI	TCGA	4 cut(s)	220, 224, 278, 474
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	86, 541
TauI	GCSGC	2 cut(s)	506, 509
Tru1I	TTAA	2 cut(s)	90, 213
Tru9I	TTAA	2 cut(s)	90, 213
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	132, 265
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	207, 273, 632
Vha464I	CTTAAG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	86, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.