Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

2867937 .. 2876607

Gene Structure 8671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGAGTGAGAGAGAGTGATTTTCAGCCGGAGGCGGACCGGGTGTTTTGCTCGATGGAATGGAGAGGGAACGAGTTGAAAGAGTATAAGTGTGTTATGGAGCAAAGTAGAAGAAAGGAAGCTAAATCAGTAAATCTGCCTGTGCAGATCAGTCAACTTCAACATGAAACTGAGAGCAGCTCAGAACGAACTAGACACATTTACAACAATGGTTGGACTAAGGCTAACTCTTCATGGAATTCGAAAGCGTTCAACTCATGGCAACCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGCCGTCATACGAAGATCAAGTACCAGTCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTACAAGCAGTTGCGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAGAATATTGAGCAACATATCCAGCAAATTATTAATTCTTTGAACCAAGAAACAGTTCAAGAGTCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGCAGAAGCTAATGAGCCTTTGGAGGCCAAGGTACTTATAGAGTGCCCTCCTACACCTACTACAACTTTAGGGCAGTCTCTTGAAGTCATGGCCTTACCTCAACCTCATAATGTATTCCATGAGTCAATTTTGGATGAGGATGAGGATACAGATTTGGATGATCCCTATGAAAAGAAACTTGAGGTTGGGACTTGTGAGGATTATGTGTTACACTATACAACCGAGCTTGAAGCATATGAAGATAGTGATATTGAAGAGTCCCTGACAGGTGAGGAATTTTACATTAAAGAAAGTAAGGTTCAACTTCATGCGAATGAGTACCAAGAGCCGGAAGTAATCATCATAGCTCATAAAGATCAAGAATACAAGGATGACATGGAGGATTGCTTAGAAGTGGAGTCCAACAAATCTCCTATAGATGGGCCTCTAATTCTATCACATGCCCGACCACCGACCATTATTTGCCACATTCGAGCTTTACATTTGTTCCCTCCTTACAAGAAACTCTTGAGTTTGTTGATCATGTGGAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

41.96

Weight (kDa)

4.58

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 410
AclWI	GGATC	3 cut(s)	281, 353, 701
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	238, 821
AfaI	GTAC	4 cut(s)	342, 390, 579, 866
AfiI	CCNNNNNNNGG	2 cut(s)	874, 965
AgsI	TTSAA	9 cut(s)	79, 161, 253, 487, 503, 629, 776, 800, 848
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	6 cut(s)	122, 180, 554, 772, 893, 1022
AluI	AGCT	6 cut(s)	122, 180, 554, 772, 893, 1022
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	3 cut(s)	281, 353, 701
AoxI	GGCC	4 cut(s)	320, 570, 636, 968
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	238, 821
AseI	ATTAAT	1 cut(s)	477
Asp700I	GAANNNNTTC	2 cut(s)	248, 498
AspS9I	GGNCC	2 cut(s)	37, 968
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	827
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	3 cut(s)	49, 959, 1071
BceAI	ACGGC	2 cut(s)	307, 425
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	1065
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	960
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 968
BmrFI	CCNGG	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	3 cut(s)	398, 746, 1075
BpuMI	CCSGG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	441, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	874, 965
Bse1I	ACTGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	441, 573
BseGI	GGATG	4 cut(s)	685, 691, 709, 922
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	874, 965
BseMII	CTCAG	2 cut(s)	162, 195
BseNI	ACTGG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	4 cut(s)	322, 572, 638, 970
BsiSI	CCGG	3 cut(s)	29, 40, 875
BslFI	GGGAC	3 cut(s)	260, 748, 790
BslI	CCNNNNNNNGG	2 cut(s)	874, 965
BsmAI	GTCTC	1 cut(s)	627
BsmFI	GGGAC	3 cut(s)	260, 748, 790
BsnI	GGCC	4 cut(s)	322, 572, 638, 970
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	388
Bsp143I	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
BspACI	CCGC	2 cut(s)	35, 410
BspANI	GGCC	4 cut(s)	322, 572, 638, 970
BspCNI	CTCAG	2 cut(s)	163, 194
BspHI	TCATGA	1 cut(s)	514
BspPI	GGATC	3 cut(s)	281, 353, 701
BspT104I	TTCGAA	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	441, 573
BssMI	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	2 cut(s)	235, 795
BstAUI	TGTACA	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	242
BstDEI	CTNAG	4 cut(s)	171, 181, 219, 934
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	4 cut(s)	685, 691, 709, 922
BstKTI	GATC	7 cut(s)	150, 289, 337, 361, 709, 904, 1068
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	989
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	4 cut(s)	322, 572, 638, 970
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	685, 691, 709, 922
CciI	TCATGA	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	37, 968
CpoI	CGGWCCG	1 cut(s)	37
Csp6I	GTAC	4 cut(s)	341, 389, 578, 865
CspI	CGGWCCG	1 cut(s)	37
CviQI	GTAC	4 cut(s)	341, 389, 578, 865
DdeI	CTNAG	4 cut(s)	171, 181, 219, 934
DpnI	GATC	7 cut(s)	149, 288, 336, 360, 708, 903, 1067
DpnII	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	235, 795
EarI	CTCTTC	2 cut(s)	235, 795
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	3 cut(s)	260, 748, 790
FauNDI	CATATG	1 cut(s)	781
FbaI	TGATCA	1 cut(s)	1065
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	4 cut(s)	692, 698, 716, 929
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	4 cut(s)	322, 572, 638, 970
HapII	CCGG	3 cut(s)	29, 40, 875
HincII	GTYRAC	2 cut(s)	155, 525
HindII	GTYRAC	2 cut(s)	155, 525
HinfI	GANTC	6 cut(s)	308, 416, 506, 668, 803, 944
HpaII	CCGG	3 cut(s)	29, 40, 875
HphI	GGTGA	1 cut(s)	827
Hpy166II	GTNNAC	2 cut(s)	155, 525
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	5 cut(s)	503, 515, 626, 905, 1054
Hpy8I	GTNNAC	2 cut(s)	155, 525
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	4 cut(s)	171, 181, 219, 934
Ksp22I	TGATCA	1 cut(s)	1065
Kzo9I	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	42, 53, 153, 357, 479, 798, 821, 888
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	753
MalI	GATC	7 cut(s)	149, 288, 336, 360, 708, 903, 1067
MboI	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
MboII	GAAGA	8 cut(s)	123, 222, 344, 425, 548, 551, 797, 812
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	7 cut(s)	238, 384, 471, 478, 672, 821, 975
MlyI	GAGTC	4 cut(s)	515, 677, 812, 953
MmeI	TCCRAC	2 cut(s)	194, 972
MroXI	GAANNNNTTC	2 cut(s)	248, 498
MseI	TTAA	2 cut(s)	477, 831
MslI	CAYNNNNRTG	2 cut(s)	316, 858
MspI	CCGG	3 cut(s)	29, 40, 875
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
NspI	RCATGY	1 cut(s)	989
NspV	TTCGAA	1 cut(s)	242
PagI	TCATGA	1 cut(s)	514
PdmI	GAANNNNTTC	2 cut(s)	248, 498
PfeI	GAWTC	2 cut(s)	308, 416
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	4 cut(s)	514, 676, 811, 952
PpsI	GAGTC	4 cut(s)	514, 676, 811, 952
PshBI	ATTAAT	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	37, 968
RsaI	GTAC	4 cut(s)	342, 390, 579, 866
RsaNI	GTAC	4 cut(s)	341, 389, 578, 865
RseI	CAYNNNNRTG	2 cut(s)	316, 858
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	477, 831
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	7 cut(s)	147, 286, 334, 358, 706, 901, 1065
Sau96I	GGNCC	2 cut(s)	37, 968
SchI	GAGTC	4 cut(s)	515, 677, 812, 953
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	960
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	316, 858
SmlI	CTYRAG	3 cut(s)	377, 725, 1054
SmoI	CTYRAG	3 cut(s)	377, 725, 1054
Sse9I	AATT	7 cut(s)	238, 384, 471, 478, 672, 821, 975
SsiI	CCGC	2 cut(s)	35, 410
SspI	AATATT	2 cut(s)	304, 451
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	3 cut(s)	53, 242, 1018
TasI	AATT	7 cut(s)	238, 384, 471, 478, 672, 821, 975
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	308, 416
Tru1I	TTAA	2 cut(s)	477, 831
Tru9I	TTAA	2 cut(s)	477, 831
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	8 cut(s)	180, 222, 300, 304, 380, 729, 798, 842
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	2 cut(s)	238, 821
XceI	RCATGY	1 cut(s)	989
XmnI	GAANNNNTTC	2 cut(s)	248, 498
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.