Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

58961546 .. 58962718

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTGGCATCAATCTTACGAGGTGTGTTCCATATGCTCTATAGTTGGTCATTCTAAGGAGACATGTCCAAGCATCCAATATCAAGGATACTACAATCAAAATACCATGCTTGGAGGATTTCAAGACAACCAAAGGCATTGGAATAATTGCTATTCTCCTCCATACAATCCGGCATGGGATAATTCTCCTTACTCTTCGTGGAATGACGATCCAAACATGCAACAAGGATCTTTCAATGAGTTCGAAGCTTCTCCATATTCATACCATGACTATTGGCCACAAGCCCCACATCCTCAAAACTCAGGTATGTCTAATAATTATGATGAGATTATTAAGGAACTAAATGCTGCTACTCAAGCTGTGATTCAGGGACAACAAGCTTTGAATGCTTCTATTCAGCAAGCTCGTGAGGGTGATGATGCTTGGGCAGAAACTCAAAGGCGTTGGGAGACCTTTATATCTCAGGAGCACCCATCTAAACCGATGGCAACTTTAGGGGAGCTCCCGACAACTACTATTTTGTGTCAACCTCATGATGCAGTCCATGATTCAACATTTGATGAGGATGTAGTAAGAGATTTGGATGAGTCTTATAAAGAGCCACTCAATGTTGAGATTTTTGAGGATCACTACATGACCGAGCTTGAAAAGTGGGAAATGGAAGATCCCTTTGATGATGAGGAATCCTATCATGAAGAAAGTAAGGATGAGCTTCATGCAAATGTGCCCCAAGTGCCTGAAACAATCATGTTACCTAATGAAGATCCAAAAGGATATGAGGCCACAAGGGAGGATTGCTTAAAAGAGGAGTCCATCAAAGCTCCTACATTTGGACCTTTATTGCTAGCACATGGAAGACCATCTGATCCTACAACGCCTCATTCAACCTCTACATGTGTTCTCCACATCCAACCAATGGATGAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAACATCTCAAATCACATAAGGAGATCATTGTAGCCGTGATTGTTGAACTTAAGAGAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAAGAGAAGCATCAAATCCTATCTTTCCATTTCTCCCAAGTTACCTAAGTTGCTAGAAAGGGCCCATGAAACATCTTTGAAGAAGCTTAAGCATCTGATCGAACCGCGGCCTAAACCTCCCGATTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag rve

Protein Analysis

390

Amino Acids

45.25

Weight (kDa)

5.14

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	916
AccII	CGCG	1 cut(s)	1147
AciI	CCGC	2 cut(s)	1145, 1147
AclWI	GGATC	6 cut(s)	203, 235, 633, 659, 758, 860
AcoI	YGGCCR	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	830, 916
AflII	CTTAAG	2 cut(s)	1004, 1127
AflIII	ACRYGT	2 cut(s)	62, 893
AgsI	TTSAA	8 cut(s)	122, 235, 385, 552, 647, 885, 1001, 1120
AluBI	AGCT	9 cut(s)	248, 359, 380, 404, 502, 643, 712, 821, 1126
AluI	AGCT	9 cut(s)	248, 359, 380, 404, 502, 643, 712, 821, 1126
Alw21I	GWGCWC	2 cut(s)	471, 504
Alw26I	GTCTC	3 cut(s)	53, 443, 1012
AlwI	GGATC	6 cut(s)	203, 235, 633, 659, 758, 860
AoxI	GGCC	4 cut(s)	275, 780, 1101, 1148
ApaI	GGGCCC	1 cut(s)	1105
ApeKI	GCWGC	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	833, 1101, 1102
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	2 cut(s)	729, 1105
BalI	TGGCCA	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	504, 1105
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	862
Bbv12I	GWGCWC	2 cut(s)	471, 504
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	5 cut(s)	478, 481, 821, 868, 937
BceAI	ACGGC	1 cut(s)	974
BciVI	GTATCC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	3 cut(s)	53, 443, 1012
BfaI	CTAG	2 cut(s)	845, 1094
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	2 cut(s)	1004, 1127
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	348, 1148
BlsI	GCNGC	2 cut(s)	349, 1149
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	3 cut(s)	833, 1101, 1102
BmiI	GGNNCC	1 cut(s)	1103
BmsI	GCATC	6 cut(s)	16, 81, 409, 526, 1059, 1141
BmtI	GCTAGC	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	862
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 916
BseDI	CCNNGG	1 cut(s)	1145
BseGI	GGATG	7 cut(s)	72, 289, 571, 589, 712, 906, 925
BseLI	CCNNNNNNNGG	2 cut(s)	830, 916
BseMII	CTCAG	2 cut(s)	315, 476
BseRI	GAGGAG	2 cut(s)	147, 821
BseSI	GKGCMC	2 cut(s)	729, 1105
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	1147
BshFI	GGCC	4 cut(s)	277, 782, 1103, 1150
BsiHKAI	GWGCWC	2 cut(s)	471, 504
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	830, 916
BsmAI	GTCTC	3 cut(s)	53, 443, 1012
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	277, 782, 1103, 1150
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	243
Bsp120I	GGGCCC	1 cut(s)	1101
Bsp1286I	GDGCHC	4 cut(s)	471, 504, 729, 1105
Bsp143I	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
BspACI	CCGC	2 cut(s)	1145, 1147
BspANI	GGCC	4 cut(s)	277, 782, 1103, 1150
BspCNI	CTCAG	2 cut(s)	314, 475
BspFNI	CGCG	1 cut(s)	1147
BspHI	TCATGA	2 cut(s)	532, 691
BspLI	GGNNCC	1 cut(s)	1103
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	6 cut(s)	203, 235, 633, 659, 758, 860
BspT104I	TTCGAA	1 cut(s)	243
BspTI	CTTAAG	2 cut(s)	1004, 1127
BspTNI	GGTCTC	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	1145
BssMI	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	199, 1025
BstAFI	CTTAAG	2 cut(s)	1004, 1127
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	402, 846
BstDEI	CTNAG	4 cut(s)	54, 301, 462, 1086
BstDSI	CCRYGG	1 cut(s)	1145
BstF5I	GGATG	7 cut(s)	72, 289, 571, 589, 712, 906, 925
BstFNI	CGCG	1 cut(s)	1147
BstKTI	GATC	9 cut(s)	211, 230, 628, 667, 766, 868, 934, 981, 1140
BstMAI	GTCTC	3 cut(s)	53, 443, 1012
BstMBI	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 386, 733
BstNSI	RCATGY	3 cut(s)	66, 220, 897
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	729, 1105
BstUI	CGCG	1 cut(s)	1147
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	3 cut(s)	227, 664, 763
BstYI	RGATCY	3 cut(s)	227, 664, 763
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	277, 782, 1103, 1150
BtgI	CCRYGG	1 cut(s)	1145
BtsCI	GGATG	7 cut(s)	72, 289, 571, 589, 712, 906, 925
Cac8I	GCNNGC	2 cut(s)	402, 846
CciI	TCATGA	2 cut(s)	532, 691
Cfr13I	GGNCC	3 cut(s)	833, 1101, 1102
Cfr42I	CCGCGG	1 cut(s)	1148
DdeI	CTNAG	4 cut(s)	54, 301, 462, 1086
DpnI	GATC	9 cut(s)	210, 229, 627, 666, 765, 867, 933, 980, 1139
DpnII	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	199, 1025
EarI	CTCTTC	2 cut(s)	199, 1025
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	2 cut(s)	504, 1105
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	1101
EcoT38I	GRGCYC	2 cut(s)	504, 1105
FaqI	GGGAC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	348, 1148
FokI	GGATG	7 cut(s)	59, 276, 578, 596, 719, 893, 932
FriOI	GRGCYC	2 cut(s)	504, 1105
Fsp4HI	GCNGC	2 cut(s)	348, 1148
FspBI	CTAG	2 cut(s)	845, 1094
GluI	GCNGC	2 cut(s)	348, 1148
HaeIII	GGCC	4 cut(s)	277, 782, 1103, 1150
HapII	CCGG	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HindIII	AAGCTT	3 cut(s)	246, 378, 1124
HinfI	GANTC	5 cut(s)	364, 548, 587, 683, 809
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	527, 956
Hpy188I	TCNGA	2 cut(s)	865, 1137
Hpy188III	TCNNGA	8 cut(s)	122, 407, 464, 505, 533, 692, 1160, 1170
Hpy8I	GTNNAC	2 cut(s)	527, 956
HpyAV	CCTTC	1 cut(s)	1008
HpyCH4V	TGCA	3 cut(s)	220, 539, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 386, 733
HpyF3I	CTNAG	4 cut(s)	54, 301, 462, 1086
Ksp22I	TGATCA	1 cut(s)	931
KspI	CCGCGG	1 cut(s)	1148
Kzo9I	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
LmnI	GCTCC	4 cut(s)	466, 499, 507, 826
LpnPI	CCDG	5 cut(s)	183, 288, 353, 449, 750
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	6 cut(s)	16, 81, 409, 526, 1059, 1141
MaeI	CTAG	2 cut(s)	845, 1094
MaeIII	GTNAC	2 cut(s)	750, 1080
MalI	GATC	9 cut(s)	210, 229, 627, 666, 765, 867, 933, 980, 1139
MboI	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
MboII	GAAGA	9 cut(s)	186, 674, 707, 773, 867, 1023, 1039, 1042, 1132
MflI	RGATCY	3 cut(s)	227, 664, 763
MhlI	GDGCHC	4 cut(s)	471, 504, 729, 1105
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	3 cut(s)	145, 181, 316
MluNI	TGGCCA	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	596, 818
MmeI	TCCRAC	1 cut(s)	934
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	4 cut(s)	333, 800, 1005, 1128
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	1147
MspCI	CTTAAG	2 cut(s)	1004, 1127
MspI	CCGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	1 cut(s)	1147
MwoI	GCNNNNNNNGC	3 cut(s)	356, 386, 733
NdeI	CATATG	1 cut(s)	32
NdeII	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
NheI	GCTAGC	1 cut(s)	844
NlaIV	GGNNCC	1 cut(s)	1103
NspI	RCATGY	3 cut(s)	66, 220, 897
NspV	TTCGAA	1 cut(s)	243
PagI	TCATGA	2 cut(s)	532, 691
PciI	ACATGT	2 cut(s)	62, 893
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	364, 548, 683
PflMI	CCANNNNNTGG	1 cut(s)	916
PkrI	GCNGC	2 cut(s)	349, 1149
PleI	GAGTC	2 cut(s)	595, 817
PpsI	GAGTC	2 cut(s)	595, 817
PscI	ACATGT	2 cut(s)	62, 893
PsiI	TTATAA	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	1103
PspOMI	GGGCCC	1 cut(s)	1101
PspPI	GGNCC	3 cut(s)	833, 1101, 1102
PsuI	RGATCY	3 cut(s)	227, 664, 763
RseI	CAYNNNNRTG	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	504
SacII	CCGCGG	1 cut(s)	1148
SaqAI	TTAA	4 cut(s)	333, 800, 1005, 1128
SatI	GCNGC	2 cut(s)	348, 1148
Sau3AI	GATC	9 cut(s)	208, 227, 625, 664, 763, 865, 931, 978, 1137
Sau96I	GGNCC	3 cut(s)	833, 1101, 1102
SchI	GAGTC	2 cut(s)	596, 818
SduI	GDGCHC	4 cut(s)	471, 504, 729, 1105
SfaNI	GCATC	6 cut(s)	16, 81, 409, 526, 1059, 1141
SfcI	CTRYAG	1 cut(s)	39
Sfr303I	CCGCGG	1 cut(s)	1148
SfuI	TTCGAA	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	1148
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	3 cut(s)	354, 1004, 1127
SmoI	CTYRAG	3 cut(s)	354, 1004, 1127
Sse9I	AATT	3 cut(s)	145, 181, 316
SsiI	CCGC	2 cut(s)	1145, 1147
SspMI	CTAG	2 cut(s)	845, 1094
SstI	GAGCTC	1 cut(s)	504
TaqI	TCGA	2 cut(s)	243, 1140
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	3 cut(s)	145, 181, 316
TauI	GCSGC	1 cut(s)	1150
TfiI	GAWTC	3 cut(s)	364, 548, 683
Tru1I	TTAA	4 cut(s)	333, 800, 1005, 1128
Tru9I	TTAA	4 cut(s)	333, 800, 1005, 1128
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	5 cut(s)	249, 704, 708, 774, 1122
Van91I	CCANNNNNTGG	1 cut(s)	916
Vha464I	CTTAAG	2 cut(s)	1004, 1127
VpaK11BI	GGWCC	1 cut(s)	833
XceI	RCATGY	3 cut(s)	66, 220, 897
XspI	CTAG	2 cut(s)	845, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.