Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

29273055 .. 29295114

Gene Structure 22060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTGGGAGGATCCCAACTCAAGCATTTACAATAATGGTTGGACTAATGCTAACTCTTCATGGAATCCGGAAGCGTTCAACTCATGGCAACCTTATCAAGTCCCTATGTATGATCCTTATCATCACAATATTGATTCATTCATGTGGTCATCATACGAAGATCAAGTACCAGTCCTCTTGGTTGATCCAATGAAGCCCTCCCTTGAGGCAATTGTACAAGCAGTTGCGAAAAGTGCGGAAGAATCATCAAGGAATATGGACAAAGCCGTGGAGAATATTGAGCGACATATCCAGCAAATTACTAATTCTTTGAACCAAGAAACAGAGGAGCGGGAAATACAATGTTGGGTTCAAGATTCATATCATGAGGTGTTGACGAGTGAGGAAGAAGATTGGGCAGAAGCTAATGAGCCTTTGGAGGCCAAGACCCGACCTTCCCTCTCGCCGGAGATCAGTGCTTCTCTCAGTTTGAATAGTAGAGCAAGCAAGAGCGATTGGAGCTCCTCTATGATAATTTCATGGAAGCTTTCACCAAAGCCGAAGAACCATCTTCTTTCTGCGCCACCGCCACTGCAAAAACCTTCAGGAGGCATCATCATCTGTGCCGGGGGTGGTGGTGGGGATAACAACGGAGGATCAGATAATGGAGTAGCCGTGAATAGTGCGGTGGCAGGTAGCCTAAAAAAAGTGTTGATTTTGATGATTTTAATGAAGGATTTGGCGATGAATATCAGGAGCTTGGTGATGCTATGGAGACTTGATCCGGCTGGTCGTAATGCATGTTTGGGTAGTGAAACAACAACATGGACTTCAAACAATCAGGGGGTTGTACATCTCACCATTGGGGACTTCCGCAAGGATTTGAAAGGTGTGACCCCTAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

32.65

Weight (kDa)

4.97

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	880
Acc36I	ACCTGC	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	5 cut(s)	236, 331, 566, 665, 853
AclWI	GGATC	6 cut(s)	5, 18, 107, 179, 643, 755
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	168, 216, 831
AfiI	CCNNNNNNNGG	2 cut(s)	445, 587
AgsI	TTSAA	6 cut(s)	79, 313, 353, 472, 813, 865
AluBI	AGCT	4 cut(s)	404, 501, 526, 738
AluI	AGCT	4 cut(s)	404, 501, 526, 738
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	748
AlwI	GGATC	6 cut(s)	5, 18, 107, 179, 643, 755
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	420
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	882
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	3 cut(s)	522, 754, 829
AvaII	GGWCC	1 cut(s)	882
AvrII	CCTAGG	1 cut(s)	878
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
Bbv12I	GWGCWC	1 cut(s)	503
BccI	CCATC	1 cut(s)	555
BceAI	ACGGC	2 cut(s)	251, 638
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	748
BfaI	CTAG	2 cut(s)	879, 886
BfuAI	ACCTGC	1 cut(s)	662
BlnI	CCTAGG	1 cut(s)	878
Bme1390I	CCNGG	1 cut(s)	607
Bme18I	GGWCC	1 cut(s)	882
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	607
BmsI	GCATC	2 cut(s)	600, 735
BpuEI	CTTGAG	2 cut(s)	4, 224
BpuMI	CCSGG	1 cut(s)	607
BsaBI	GATNNNNATC	3 cut(s)	117, 360, 728
BsaJI	CCNNGG	3 cut(s)	267, 606, 878
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 587
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	3 cut(s)	117, 360, 728
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	267, 606, 878
BseJI	GATNNNNATC	3 cut(s)	117, 360, 728
BseLI	CCNNNNNNNGG	2 cut(s)	445, 587
BseMII	CTCAG	1 cut(s)	478
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	341, 493
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	68, 446, 606, 764
BslFI	GGGAC	2 cut(s)	86, 860
BslI	CCNNNNNNNGG	2 cut(s)	445, 587
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	86, 860
BsnI	GGCC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	2 cut(s)	214, 829
Bsp143I	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
BspACI	CCGC	5 cut(s)	236, 331, 566, 665, 853
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	477
BspEI	TCCGGA	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	6 cut(s)	5, 18, 107, 179, 643, 755
BsrBI	CCGCTC	1 cut(s)	331
BsrGI	TGTACA	2 cut(s)	214, 829
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	267, 606, 878
BssMI	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
BssT1I	CCWWGG	1 cut(s)	878
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	2 cut(s)	214, 829
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	7 cut(s)	13, 115, 163, 187, 453, 638, 763
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 498
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	737
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	460, 569
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	882
Csp6I	GTAC	3 cut(s)	167, 215, 830
CviAII	CATG	7 cut(s)	60, 84, 142, 365, 519, 780, 804
CviQI	GTAC	3 cut(s)	167, 215, 830
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	7 cut(s)	12, 114, 162, 186, 452, 637, 762
DpnII	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
DrdI	GACNNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	880
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	882
Eco53kI	GAGCTC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	878
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	878
FaeI	CATG	7 cut(s)	63, 87, 145, 368, 522, 783, 807
FaqI	GGGAC	2 cut(s)	86, 860
FatI	CATG	7 cut(s)	59, 83, 141, 364, 518, 779, 803
FauI	CCCGC	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	503
FspBI	CTAG	2 cut(s)	879, 886
GlaI	GCGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	4 cut(s)	68, 446, 606, 764
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	7 cut(s)	63, 87, 145, 368, 522, 783, 807
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	64, 134, 242, 356
HpaII	CCGG	4 cut(s)	68, 446, 606, 764
HphI	GGTGA	3 cut(s)	522, 754, 829
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	5 cut(s)	68, 353, 365, 585, 733
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	3 cut(s)	444, 591, 706
HpyCH4V	TGCA	2 cut(s)	574, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 498
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	7 cut(s)	63, 87, 145, 368, 522, 783, 807
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
LmnI	GCTCC	4 cut(s)	328, 498, 506, 735
LweI	GCATC	2 cut(s)	600, 735
MaeI	CTAG	2 cut(s)	879, 886
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	7 cut(s)	12, 114, 162, 186, 452, 637, 762
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
MboII	GAAGA	7 cut(s)	48, 170, 251, 398, 401, 542, 553
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	4 cut(s)	210, 297, 304, 513
MmeI	TCCRAC	1 cut(s)	20
Mph1103I	ATGCAT	1 cut(s)	781
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	1 cut(s)	707
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	4 cut(s)	68, 446, 606, 764
MspR9I	CCNGG	1 cut(s)	607
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	233, 498
NciI	CCSGG	1 cut(s)	607
NdeII	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
NlaIII	CATG	7 cut(s)	63, 87, 145, 368, 522, 783, 807
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	871
NsiI	ATGCAT	1 cut(s)	781
NspI	RCATGY	1 cut(s)	783
PagI	TCATGA	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	64, 134, 242, 356
PpuMI	RGGWCCY	1 cut(s)	882
Psp124BI	GAGCTC	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	882
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	882
PspPPI	RGGWCCY	1 cut(s)	882
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	168, 216, 831
RsaNI	GTAC	3 cut(s)	167, 215, 830
RseI	CAYNNNNRTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	707
Sau3AI	GATC	7 cut(s)	10, 112, 160, 184, 450, 635, 760
Sau96I	GGNCC	1 cut(s)	882
ScrFI	CCNGG	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	2 cut(s)	600, 735
SinI	GGWCC	1 cut(s)	882
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	19, 203
SmoI	CTYRAG	2 cut(s)	19, 203
Sse9I	AATT	4 cut(s)	210, 297, 304, 513
SsiI	CCGC	5 cut(s)	236, 331, 566, 665, 853
SspI	AATATT	2 cut(s)	130, 277
SspMI	CTAG	2 cut(s)	879, 886
SstI	GAGCTC	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	605
StyI	CCWWGG	1 cut(s)	878
TasI	AATT	4 cut(s)	210, 297, 304, 513
TatI	WGTACW	2 cut(s)	214, 829
TfiI	GAWTC	4 cut(s)	64, 134, 242, 356
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	2 cut(s)	460, 576
TseFI	GTSAC	1 cut(s)	871
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	8 cut(s)	48, 126, 130, 206, 348, 507, 725, 740
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	2 cut(s)	460, 576
VpaK11BI	GGWCC	1 cut(s)	882
XagI	CCTNNNNNAGG	1 cut(s)	585
XceI	RCATGY	1 cut(s)	783
XmaJI	CCTAGG	1 cut(s)	878
XspI	CTAG	2 cut(s)	879, 886
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.