Rmu_sc0009036.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009036.1
OG0001602
Physical Location & Seq
Forward (+)
48363 .. 49181
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009036.1_g000007.1.cds

Sequence Viewer

Length: 819 bp
atgtgggaggatcccaactcaaacatttacaacaatggttggactaatgctaactcttcatggaatccggaagcgttcaactcatgccagccttatcaagtccctatgtatgatccttaccatcacaatattgattcattcatgtggccgtcataccaagatcaattattagtcctcttggttgatccaatgaagccctctcttgaggcaattgtacaagcagttgcgaaaagtgcggaagaatcatcaaggaatatggacaaagctgtggagaatattgagcaacatatccagcaaattattaattctttgaaccaagaaacagaggagcgggaaacacaatgttgggctcaagagtcatatcatgaggtgttgatgagtgaggaagaagattgggcagaaactaatgagcctttggaggcgaaggtacttatggagtgccctcctacacctacgacaactttagggcagtcccttgaagtcacggccttacctcaacctcataatgtattccatgagtcaattttggatgaggatgaggatacagatttggatgagccctgtgaaaagaaacttgaggttgggacgtgtgaggattatgtgttacactatacaactaagcttgaagcatatggagatggtgatattgaagagtctttgacaggtgaggaattttacattaaagaaagtaaggttcagcttcatgcgaatgagtaccgagtgccggaagcaatcatcatagctcataaagatcaagaatacaaggatgacatggaggattgcttagaagaggagtccagcaaatctcctacagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.37

Weight (kDa)

4.14

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 2 cut(s) 236, 331
AclWI GGATC 4 cut(s) 5, 18, 107, 179
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 671
AfaI GTAC 3 cut(s) 216, 429, 716
AfiI CCNNNNNNNGG 1 cut(s) 724
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 5 cut(s) 79, 313, 479, 626, 650
AjiI CACGTC 1 cut(s) 588
AluBI AGCT 4 cut(s) 266, 622, 700, 743
AluI AGCT 4 cut(s) 266, 622, 700, 743
AlwI GGATC 4 cut(s) 5, 18, 107, 179
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 2 cut(s) 146, 486
ApoI RAATTY 1 cut(s) 671
AseI ATTAAT 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 653, 677
BaeGI GKGCMC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 352, 561
BccI CCATC 2 cut(s) 129, 632
BceAI ACGGC 2 cut(s) 133, 501
BciVI GTATCC 1 cut(s) 535
BfaI CTAG 1 cut(s) 817
BfmI CTRYAG 1 cut(s) 810
BfuI GTATCC 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 224, 336, 596
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 724
BseAI TCCGGA 1 cut(s) 67
BseGI GGATG 4 cut(s) 535, 541, 559, 772
BseLI CCNNNNNNNGG 1 cut(s) 724
BseRI GAGGAG 2 cut(s) 341, 806
BseSI GKGCMC 1 cut(s) 443
BshFI GGCC 2 cut(s) 148, 488
BsiSI CCGG 2 cut(s) 68, 725
BslFI GGGAC 3 cut(s) 86, 457, 598
BslI CCNNNNNNNGG 1 cut(s) 724
BsmFI GGGAC 3 cut(s) 86, 457, 598
BsnI GGCC 2 cut(s) 148, 488
Bsp1286I GDGCHC 3 cut(s) 352, 443, 561
Bsp13I TCCGGA 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 214
Bsp143I GATC 5 cut(s) 10, 112, 160, 184, 751
BspACI CCGC 2 cut(s) 236, 331
BspANI GGCC 2 cut(s) 148, 488
BspEI TCCGGA 1 cut(s) 67
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 4 cut(s) 5, 18, 107, 179
BsrBI CCGCTC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 214
BssMI GATC 5 cut(s) 10, 112, 160, 184, 751
Bst6I CTCTTC 3 cut(s) 61, 645, 783
BstAUI TGTACA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 618, 784
BstF5I GGATG 4 cut(s) 535, 541, 559, 772
BstKTI GATC 5 cut(s) 13, 115, 163, 187, 754
BstMBI GATC 5 cut(s) 10, 112, 160, 184, 751
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 2 cut(s) 148, 488
BtrI CACGTC 1 cut(s) 588
BtsCI GGATG 4 cut(s) 535, 541, 559, 772
Cac8I GCNNGC 1 cut(s) 89
CciI TCATGA 1 cut(s) 364
Csp6I GTAC 3 cut(s) 215, 428, 715
CviAII CATG 7 cut(s) 60, 84, 142, 365, 515, 704, 772
CviQI GTAC 3 cut(s) 215, 428, 715
DdeI CTNAG 2 cut(s) 618, 784
DpnI GATC 5 cut(s) 12, 114, 162, 186, 753
DpnII GATC 5 cut(s) 10, 112, 160, 184, 751
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 3 cut(s) 61, 645, 783
EarI CTCTTC 3 cut(s) 61, 645, 783
Eco24I GRGCYC 2 cut(s) 352, 561
EcoT38I GRGCYC 2 cut(s) 352, 561
FaeI CATG 7 cut(s) 63, 87, 145, 368, 518, 707, 775
FaqI GGGAC 3 cut(s) 86, 457, 598
FatI CATG 7 cut(s) 59, 83, 141, 364, 514, 703, 771
FauI CCCGC 1 cut(s) 324
FauNDI CATATG 1 cut(s) 631
FokI GGATG 4 cut(s) 542, 548, 566, 779
FriOI GRGCYC 2 cut(s) 352, 561
FspBI CTAG 1 cut(s) 817
HaeIII GGCC 2 cut(s) 148, 488
HapII CCGG 2 cut(s) 68, 725
Hin1II CATG 7 cut(s) 63, 87, 145, 368, 518, 707, 775
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 7 cut(s) 64, 134, 242, 356, 518, 653, 794
HpaII CCGG 2 cut(s) 68, 725
HphI GGTGA 2 cut(s) 653, 677
Hpy188III TCNNGA 5 cut(s) 68, 203, 353, 365, 755
HpyAV CCTTC 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 618, 784
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 7 cut(s) 63, 87, 145, 368, 518, 707, 775
Kpn2I TCCGGA 1 cut(s) 67
Kzo9I GATC 5 cut(s) 10, 112, 160, 184, 751
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 7 cut(s) 81, 101, 305, 574, 648, 738, 811
MaeI CTAG 1 cut(s) 817
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 481, 603
MalI GATC 5 cut(s) 12, 114, 162, 186, 753
MbiI CCGCTC 1 cut(s) 331
MboI GATC 5 cut(s) 10, 112, 160, 184, 751
MboII GAAGA 6 cut(s) 48, 251, 398, 401, 662, 800
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 352, 443, 561
MluCI AATT 6 cut(s) 164, 210, 297, 304, 522, 671
MlyI GAGTC 4 cut(s) 365, 527, 662, 803
MmeI TCCRAC 1 cut(s) 20
MroI TCCGGA 1 cut(s) 67
MseI TTAA 2 cut(s) 303, 681
MslI CAYNNNNRTG 2 cut(s) 142, 708
MspI CCGG 2 cut(s) 68, 725
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 631
NdeII GATC 5 cut(s) 10, 112, 160, 184, 751
NlaIII CATG 7 cut(s) 63, 87, 145, 368, 518, 707, 775
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 481
PagI TCATGA 1 cut(s) 364
PfeI GAWTC 3 cut(s) 64, 134, 242
PleI GAGTC 4 cut(s) 364, 526, 661, 802
PpsI GAGTC 4 cut(s) 364, 526, 661, 802
PshBI ATTAAT 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 3 cut(s) 216, 429, 716
RsaNI GTAC 3 cut(s) 215, 428, 715
RseI CAYNNNNRTG 2 cut(s) 142, 708
SaqAI TTAA 2 cut(s) 303, 681
Sau3AI GATC 5 cut(s) 10, 112, 160, 184, 751
SchI GAGTC 4 cut(s) 365, 527, 662, 803
SduI GDGCHC 3 cut(s) 352, 443, 561
SfcI CTRYAG 1 cut(s) 810
SmiMI CAYNNNNRTG 2 cut(s) 142, 708
SmlI CTYRAG 3 cut(s) 203, 351, 575
SmoI CTYRAG 3 cut(s) 203, 351, 575
Sse9I AATT 6 cut(s) 164, 210, 297, 304, 522, 671
SsiI CCGC 2 cut(s) 236, 331
SspI AATATT 2 cut(s) 130, 277
SspMI CTAG 1 cut(s) 817
TaiI ACGT 1 cut(s) 590
TasI AATT 6 cut(s) 164, 210, 297, 304, 522, 671
TatI WGTACW 1 cut(s) 214
TfiI GAWTC 3 cut(s) 64, 134, 242
Tru1I TTAA 2 cut(s) 303, 681
Tru9I TTAA 2 cut(s) 303, 681
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 48, 126, 130, 206, 692
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 671
XspI CTAG 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.