Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002935.1

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Forward (+)

84920 .. 85843

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002935.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgtgggaggatcccaactcaagcatttacaataatggttggactaatactaactcttcatggaatccggaagcgttcaactcatggcaaccttatcaagtccctatgtatgatccttatcatcacaatattgattcattcatgtggtcgtcatacgaagatcaagtaccagtcctcttggttgatccattgaagccctcccttgaggcaattgtacaagaagttgcgaaaagtgcggaagaatcatcaaggaatatggacaaagctgtggagaatattgagcgacatatccagcaaattactaattctttgaaccaagaaacagaggaacgggaaatacaatgctgggttcaagagtcatatcatgaggtgttgacgagtgaggaagaagattgggcagaagctaatgagcctttggaggccaaggtacttatggagtgccctcctacacttactacaactttagggcagtcccttgaagtcacagccttacctcaacctcataatgtattccatgagtcaattttggatgaggatgaggatacagatttagatgagccctatgaaaagaaacttgaggttgggacgtgtgaggattatgtgtcacaccatacaaccgagcttgaagcatatgaagatagtgatattgaagagtccttgacagatgaggaattttacattaaagaaaataaggttcagtttcatgcgaatgagtaccaagtgctggaagcaatcattatagctcataaagatcaagaatacaaggatgacatggaggattgcttagaagaggagtccagcaaatctcctatagacgggtttctaattctatcacatgccgaccacctgaccattacttgccacattcgaggtttacatttgttccctccatacaagaaactcttgagtttgttgatcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

35.7

Weight (kDa)

4.25

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	4 cut(s)	5, 18, 107, 179
AcsI	RAATTY	1 cut(s)	671
AfaI	GTAC	4 cut(s)	168, 216, 429, 716
AfiI	CCNNNNNNNGG	2 cut(s)	724, 815
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	7 cut(s)	79, 193, 313, 353, 479, 626, 650
AjiI	CACGTC	1 cut(s)	588
AluBI	AGCT	4 cut(s)	266, 404, 622, 743
AluI	AGCT	4 cut(s)	266, 404, 622, 743
AlwI	GGATC	4 cut(s)	5, 18, 107, 179
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	443
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	561
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	1 cut(s)	915
BfmI	CTRYAG	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	535
BmgBI	CACGTC	1 cut(s)	588
BmiI	GGNNCC	1 cut(s)	12
BpuEI	CTTGAG	3 cut(s)	4, 224, 596
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 815
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	3 cut(s)	535, 541, 772
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	724, 815
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	443
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	3 cut(s)	86, 457, 598
BslI	CCNNNNNNNGG	2 cut(s)	724, 815
BsmFI	GGGAC	3 cut(s)	86, 457, 598
BsnI	GGCC	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	443, 561
Bsp13I	TCCGGA	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	422
BspEI	TCCGGA	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	5, 18, 107, 179
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
BssT1I	CCWWGG	1 cut(s)	423
Bst6I	CTCTTC	3 cut(s)	61, 645, 783
BstAUI	TGTACA	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	535, 541, 772
BstKTI	GATC	6 cut(s)	13, 115, 163, 187, 754, 918
BstMBI	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	422
BtrI	CACGTC	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	535, 541, 772
CciI	TCATGA	1 cut(s)	364
Csp6I	GTAC	4 cut(s)	167, 215, 428, 715
CviAII	CATG	9 cut(s)	60, 84, 142, 365, 515, 704, 772, 836, 919
CviJI	RGCY	9 cut(s)	196, 266, 404, 412, 422, 488, 559, 622, 743
CviKI_1	RGCY	9 cut(s)	196, 266, 404, 412, 422, 488, 559, 622, 743
CviQI	GTAC	4 cut(s)	167, 215, 428, 715
DdeI	CTNAG	1 cut(s)	784
DpnI	GATC	6 cut(s)	12, 114, 162, 186, 753, 917
DpnII	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
Eam1104I	CTCTTC	3 cut(s)	61, 645, 783
EarI	CTCTTC	3 cut(s)	61, 645, 783
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	9 cut(s)	63, 87, 145, 368, 518, 707, 775, 839, 922
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	3 cut(s)	86, 457, 598
FatI	CATG	9 cut(s)	59, 83, 141, 364, 514, 703, 771, 835, 918
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	915
FokI	GGATG	3 cut(s)	542, 548, 779
FriOI	GRGCYC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	9 cut(s)	63, 87, 145, 368, 518, 707, 775, 839, 922
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	7 cut(s)	64, 134, 242, 356, 518, 653, 794
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	375, 875
Hpy188III	TCNNGA	5 cut(s)	68, 353, 365, 755, 904
Hpy8I	GTNNAC	2 cut(s)	375, 875
HpyCH4IV	ACGT	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	784
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	9 cut(s)	63, 87, 145, 368, 518, 707, 775, 839, 922
Kpn2I	TCCGGA	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	915
Kzo9I	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
LpnPI	CCDG	7 cut(s)	81, 183, 305, 331, 710, 811, 860
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	481, 603
MalI	GATC	6 cut(s)	12, 114, 162, 186, 753, 917
MboI	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
MboII	GAAGA	8 cut(s)	48, 170, 251, 398, 401, 647, 662, 800
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	443, 561
MluCI	AATT	6 cut(s)	210, 297, 304, 522, 671, 825
MlyI	GAGTC	4 cut(s)	365, 527, 662, 803
MmeI	TCCRAC	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	2 cut(s)	142, 708
MspI	CCGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
NlaIII	CATG	9 cut(s)	63, 87, 145, 368, 518, 707, 775, 839, 922
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	481, 603
NspI	RCATGY	1 cut(s)	839
PagI	TCATGA	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	64, 134, 242
PflMI	CCANNNNNTGG	1 cut(s)	724
PleI	GAGTC	4 cut(s)	364, 526, 661, 802
PpsI	GAGTC	4 cut(s)	364, 526, 661, 802
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	4 cut(s)	168, 216, 429, 716
RsaNI	GTAC	4 cut(s)	167, 215, 428, 715
RseI	CAYNNNNRTG	2 cut(s)	142, 708
SaqAI	TTAA	1 cut(s)	681
Sau3AI	GATC	6 cut(s)	10, 112, 160, 184, 751, 915
SchI	GAGTC	4 cut(s)	365, 527, 662, 803
SduI	GDGCHC	2 cut(s)	443, 561
SfcI	CTRYAG	1 cut(s)	810
SmiMI	CAYNNNNRTG	2 cut(s)	142, 708
SmlI	CTYRAG	4 cut(s)	19, 203, 575, 904
SmoI	CTYRAG	4 cut(s)	19, 203, 575, 904
Sse9I	AATT	6 cut(s)	210, 297, 304, 522, 671, 825
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	2 cut(s)	130, 277
StyI	CCWWGG	1 cut(s)	423
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	1 cut(s)	868
TasI	AATT	6 cut(s)	210, 297, 304, 522, 671, 825
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	64, 134, 242
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseFI	GTSAC	2 cut(s)	481, 603
Tsp45I	GTSAC	2 cut(s)	481, 603
TspDTI	ATGAA	6 cut(s)	48, 126, 130, 579, 648, 692
Van91I	CCANNNNNTGG	1 cut(s)	724
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.