Rroxscaffold_1G00003100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001602
Physical Location & Seq
Reverse (-)
3631836 .. 3632751
916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003100.1

Sequence Viewer

Length: 633 bp
ATGCCTCATTCAAGCTCTACACATGTTCTCCCCATCCAAGCAAAGTTTGAGTTTGTTGATCATGTGGAGATGGTCATAAGTGAATATCTCAAATCGGATAAGGAGATAATTCTTGCCGTGATTGTTAAAGTTAAGAAAAGAAGGAGACAATGGAAGAAGAGAAAGAAAAATAAAAGCATCAAATCCTATCTTTCCATTGTTCCCAAGTTACCTAAGTTGCTAGCAAGGGACCATGAAACATCTTTGAAGAGGCTTAAGCATCTGATCGAACCGCGACCTAAACCTCCGATTACTCTTGATGAAGAGCTGCTATGTCATAAGGTTGTAGAGAAGTGTGAAAAGTGTTGCTTTTGTAAAAACAGATTGCCGACCATAGAGTCCGTCTACTTTAGACAACTGCCGTTTTTCAATCAGATGGAACTAGAAGATCGAGGTCAGTCCAGGAAAACAGAAAACTGTGCAGTTGTGTCACAGAAAAAGAAAACTGGGCATATCTCCGTGGTTGAAATGAGGAGTTCTTTACATGGACTCAAAGCTCTATATGTATACTACGTTCAGACCAAAACTCTCGTCCATTGGACCAGTGATGCTCCCGGAATAAAGGGCTATAACTTTCAAACCGCTTGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.57

Weight (kDa)

9.76

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AccI GTMKAC 2 cut(s) 384, 546
AccII CGCG 1 cut(s) 274
AciI CCGC 2 cut(s) 272, 621
AflII CTTAAG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 12, 247, 409, 506, 617
AjnI CCWGG 1 cut(s) 440
AluBI AGCT 3 cut(s) 15, 307, 536
AluI AGCT 3 cut(s) 15, 307, 536
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 555, 587
AspS9I GGNCC 2 cut(s) 229, 579
AsuC2I CCSGG 1 cut(s) 594
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 2 cut(s) 229, 579
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 41, 64, 409
BceAI ACGGC 2 cut(s) 101, 385
BciT130I CCWGG 1 cut(s) 442
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 2 cut(s) 221, 422
BfrI CTTAAG 1 cut(s) 254
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 442, 594
Bme18I GGWCC 2 cut(s) 229, 579
BmgT120I GGNCC 2 cut(s) 229, 579
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 442, 594
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 186, 268, 577
BmtI GCTAGC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse1I ACTGG 2 cut(s) 490, 582
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 490, 582
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 58, 264, 427
BspACI CCGC 2 cut(s) 272, 621
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 230
BspOI GCTAGC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 254
BsrI ACTGG 2 cut(s) 490, 582
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 3 cut(s) 58, 264, 427
BssNAI GTATAC 1 cut(s) 547
Bst1107I GTATAC 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 3 cut(s) 152, 242, 297
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 213, 630
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 3 cut(s) 61, 267, 430
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 3 cut(s) 58, 264, 427
BstNI CCWGG 1 cut(s) 442
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 440, 592
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 294
BstZ17I GTATAC 1 cut(s) 547
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 229, 579
CviAII CATG 4 cut(s) 23, 62, 233, 524
CviJI RGCY 5 cut(s) 15, 253, 307, 536, 606
CviKI_1 RGCY 5 cut(s) 15, 253, 307, 536, 606
DdeI CTNAG 2 cut(s) 213, 630
DpnI GATC 3 cut(s) 60, 266, 429
DpnII GATC 3 cut(s) 58, 264, 427
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 152, 242, 297
EarI CTCTTC 3 cut(s) 152, 242, 297
Eco47I GGWCC 2 cut(s) 229, 579
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 4 cut(s) 26, 65, 236, 527
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 22, 61, 232, 523
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 2 cut(s) 384, 546
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 2 cut(s) 221, 422
GluI GCNGC 1 cut(s) 308
HapII CCGG 1 cut(s) 594
Hin1II CATG 4 cut(s) 26, 65, 236, 527
HinfI GANTC 2 cut(s) 377, 528
HpaII CCGG 1 cut(s) 594
Hpy166II GTNNAC 2 cut(s) 385, 547
Hpy188I TCNGA 5 cut(s) 97, 264, 288, 414, 558
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 2 cut(s) 385, 547
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 1 cut(s) 461
HpyF3I CTNAG 2 cut(s) 213, 630
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 4 cut(s) 26, 65, 236, 527
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 264, 427
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 5 cut(s) 427, 454, 471, 595, 607
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 3 cut(s) 186, 268, 577
MaeI CTAG 2 cut(s) 221, 422
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 207, 468
MalI GATC 3 cut(s) 60, 266, 429
MboI GATC 3 cut(s) 58, 264, 427
MboII GAAGA 5 cut(s) 166, 169, 259, 314, 437
MluCI AATT 1 cut(s) 108
MlyI GAGTC 2 cut(s) 386, 522
MnlI CCTC 5 cut(s) 15, 243, 294, 425, 504
MseI TTAA 3 cut(s) 126, 132, 255
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 442, 594
MvaI CCWGG 1 cut(s) 442
MvnI CGCG 1 cut(s) 274
NciI CCSGG 1 cut(s) 594
NdeII GATC 3 cut(s) 58, 264, 427
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 4 cut(s) 26, 65, 236, 527
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 468
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 297
PfoI TCCNGGA 2 cut(s) 440, 592
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 2 cut(s) 385, 522
PpsI GAGTC 2 cut(s) 385, 522
PscI ACATGT 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 229, 579
PsrI GAACNNNNNNTAC 2 cut(s) 537, 569
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 126, 132, 255
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 3 cut(s) 58, 264, 427
Sau96I GGNCC 2 cut(s) 229, 579
SchI GAGTC 2 cut(s) 386, 522
ScrFI CCNGG 2 cut(s) 442, 594
SetI ASST 9 cut(s) 17, 214, 280, 286, 309, 324, 436, 538, 555
SfaNI GCATC 3 cut(s) 186, 268, 577
SinI GGWCC 2 cut(s) 229, 579
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 272, 621
SspMI CTAG 2 cut(s) 221, 422
StyD4I CCNGG 2 cut(s) 440, 592
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 267, 430
TasI AATT 1 cut(s) 108
Tru1I TTAA 3 cut(s) 126, 132, 255
Tru9I TTAA 3 cut(s) 126, 132, 255
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 2 cut(s) 249, 315
TspGWI ACGGA 2 cut(s) 370, 487
TspRI CASTG 1 cut(s) 589
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 229, 579
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 384, 546
XspI CTAG 2 cut(s) 221, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.