Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002737.1

Orthogroup ID

OG0001602

Physical Location & Seq

Genomic Coordinates Reverse (-)

148541 .. 149422

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002737.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgtctaataatgatgatgagattattaaggaactaaatgctgctactcaagctttgattcagggacaacaagcttcagatgcttcttttcaagcttggattcaggaaaagcaagctcttgatgatgatttggcagaaaaactaaagcgtttggagaacttaatatctcaggagcatccttctaaaccgatggcaactttcagggagctcccaacaactacggctttgtgtcaacctcatgatgcagtccatgattcaacatttgatgaggatgaagtaatggatttggaggagtcatataaagagcaactcaatgttgagacttgtgatgactatgaactatgctacataaccgagcttgaaaagtcggaaatggaagatccgtttgatgatgatgaatcctatcacgaaggaagtaaggatgatcttcatgcacgtgcgtcccaaatgcctgaaccaatcatgctaccttatcaagatccaagaggttacacaatggaggatttcttaaaagacgagtccaacaaagctcctacatttgggcctttattgttagcacatggaagaccatctgatcctacaatgcctcattcaacctctacacatgttctccccatccaagaaacggttgagtttgttgatcatgtggagatggtcataagtgaacatctcaaatcacataaggagatcattgtagccgtgattgttgaacttaagagaagaatgagacaatggaataagagaaagaaaaagagaagcatcaaatcctatctttccattgctcccaagttacctaagttgctggaaagggcccacgaaacatctttgaagaagcttaagcatctgatcgaaccgcggcctaaacctcctgattactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

33.79

Weight (kDa)

5.02

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001602)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24111 FvH4_2g35541
rosa_chinensis	RchiOBHm_Chr2g0136241
rosa_laevigata	RLG00000002772
rosa_multiflora	Rmu_sc0000147.1_g000100 Rmu_sc0000168.1_g000025 Rmu_sc0000334.1_g000016 Rmu_sc0000498.1_g000030 Rmu_sc0000655.1_g000009 Rmu_sc0000698.1_g000093 Rmu_sc0001009.1_g000026 Rmu_sc0001291.1_g000039 Rmu_sc0001891.1_g000019 Rmu_sc0002460.1_g000030 Rmu_sc0002737.1_g000024 Rmu_sc0002935.1_g000018 Rmu_sc0003492.1_g000014 Rmu_sc0004092.1_g000004 Rmu_sc0006648.1_g000003 Rmu_sc0009036.1_g000007 Rmu_sc0009305.1_g000001 Rmu_sc0010589.1_g000004 Rmu_sc0013054.1_g000001 Rmu_sc0016839.1_g000001 Rmu_sc0022803.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002390 Rroxscaffold_1G00003100 Rroxscaffold_2G00077900 Rroxscaffold_2G00116440 Rroxscaffold_3G00224850 Rroxscaffold_3G00235300 Rroxscaffold_3G00265970 Rroxscaffold_3G00274300 Rroxscaffold_4G00329060 Rroxscaffold_4G00332480 Rroxscaffold_5G00335940 Rroxscaffold_5G00337700 Rroxscaffold_5G00378510 Rroxscaffold_6G00388480 Rroxscaffold_6G00389900 Rroxscaffold_6G00391070 Rroxscaffold_6G00392890 Rroxscaffold_6G00394900 Rroxscaffold_6G00399570 Rroxscaffold_6G00414360 Rroxscaffold_7G00187910
rosa_samantha	Rh1DG222000 Rh3CG300900 Rh4AG014900 Rh5DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	856
AciI	CCGC	2 cut(s)	854, 856
AclWI	GGATC	3 cut(s)	374, 473, 569
AcuI	CTGAAG	1 cut(s)	60
AcvI	CACGTG	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	539, 625
AflII	CTTAAG	2 cut(s)	713, 836
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	92, 258, 362, 594, 710, 829
AluBI	AGCT	8 cut(s)	53, 74, 95, 116, 208, 358, 530, 835
AluI	AGCT	8 cut(s)	53, 74, 95, 116, 208, 358, 530, 835
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	314, 721
AlwI	GGATC	3 cut(s)	374, 473, 569
AoxI	GGCC	3 cut(s)	542, 810, 857
ApaI	GGGCCC	1 cut(s)	814
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	542, 810, 811
BaeGI	GKGCMC	1 cut(s)	814
BanII	GRGCYC	2 cut(s)	210, 814
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	4 cut(s)	184, 577, 623, 646
BceAI	ACGGC	2 cut(s)	237, 683
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	2 cut(s)	314, 721
BfrI	CTTAAG	2 cut(s)	713, 836
BisI	GCNGC	2 cut(s)	42, 857
BlsI	GCNGC	2 cut(s)	43, 858
BmgT120I	GGNCC	3 cut(s)	542, 810, 811
BmiI	GGNNCC	1 cut(s)	812
BmsI	GCATC	5 cut(s)	70, 184, 232, 768, 850
BpiI	GAAGAC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	854
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 625
Bse3DI	GCAATG	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	4 cut(s)	175, 277, 427, 615
BseLI	CCNNNNNNNGG	2 cut(s)	539, 625
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	3 cut(s)	544, 812, 859
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	78, 427
BslI	CCNNNNNNNGG	2 cut(s)	539, 625
BsmAI	GTCTC	2 cut(s)	314, 721
BsmFI	GGGAC	2 cut(s)	78, 427
BsnI	GGCC	3 cut(s)	544, 812, 859
Bsp120I	GGGCCC	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	210, 814
Bsp143I	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
BspACI	CCGC	2 cut(s)	854, 856
BspANI	GGCC	3 cut(s)	544, 812, 859
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	856
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	812
BspPI	GGATC	3 cut(s)	374, 473, 569
BspTI	CTTAAG	2 cut(s)	713, 836
BsrDI	GCAATG	1 cut(s)	777
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
Bst4CI	ACNGT	1 cut(s)	628
BstAFI	CTTAAG	2 cut(s)	713, 836
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	168, 795
BstDSI	CCRYGG	1 cut(s)	854
BstF5I	GGATG	4 cut(s)	175, 277, 427, 615
BstFNI	CGCG	1 cut(s)	856
BstKTI	GATC	7 cut(s)	382, 427, 481, 577, 643, 690, 849
BstMAI	GTCTC	2 cut(s)	314, 721
BstMBI	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 80
BstNSI	RCATGY	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	814
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	379, 478
BstYI	RGATCY	2 cut(s)	379, 478
BsuRI	GGCC	3 cut(s)	544, 812, 859
BtgI	CCRYGG	1 cut(s)	854
BtsCI	GGATG	4 cut(s)	175, 277, 427, 615
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	542, 810, 811
Cfr42I	CCGCGG	1 cut(s)	857
CseI	GACGC	1 cut(s)	429
CviAII	CATG	7 cut(s)	239, 251, 431, 463, 560, 605, 644
DdeI	CTNAG	2 cut(s)	168, 795
DpnI	GATC	7 cut(s)	381, 426, 480, 576, 642, 689, 848
DpnII	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 814
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	210, 814
FaeI	CATG	7 cut(s)	242, 254, 434, 466, 563, 608, 647
FaqI	GGGAC	2 cut(s)	78, 427
FatI	CATG	7 cut(s)	238, 250, 430, 462, 559, 604, 643
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	42, 857
FokI	GGATG	4 cut(s)	162, 284, 434, 602
FriOI	GRGCYC	2 cut(s)	210, 814
Fsp4HI	GCNGC	2 cut(s)	42, 857
GluI	GCNGC	2 cut(s)	42, 857
HaeIII	GGCC	3 cut(s)	544, 812, 859
HgaI	GACGC	1 cut(s)	429
Hin1II	CATG	7 cut(s)	242, 254, 434, 466, 563, 608, 647
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HindIII	AAGCTT	4 cut(s)	51, 72, 93, 833
HinfI	GANTC	6 cut(s)	58, 100, 254, 293, 398, 518
Hpy166II	GTNNAC	2 cut(s)	233, 665
Hpy188I	TCNGA	4 cut(s)	79, 370, 574, 846
Hpy188III	TCNNGA	8 cut(s)	104, 119, 170, 239, 407, 476, 869, 879
Hpy8I	GTNNAC	2 cut(s)	233, 665
HpyAV	CCTTC	2 cut(s)	189, 404
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	245, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 80
HpyF3I	CTNAG	2 cut(s)	168, 795
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	7 cut(s)	242, 254, 434, 466, 563, 608, 647
Ksp22I	TGATCA	1 cut(s)	640
KspI	CCGCGG	1 cut(s)	857
Kzo9I	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
LmnI	GCTCC	5 cut(s)	172, 205, 213, 535, 787
LpnPI	CCDG	6 cut(s)	47, 89, 155, 187, 465, 788
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	5 cut(s)	70, 184, 232, 768, 850
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	488, 789
MalI	GATC	7 cut(s)	381, 426, 480, 576, 642, 689, 848
MboI	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
MboII	GAAGA	5 cut(s)	389, 419, 576, 732, 841
MflI	RGATCY	2 cut(s)	379, 478
MhlI	GDGCHC	2 cut(s)	210, 814
MlyI	GAGTC	2 cut(s)	302, 527
MmeI	TCCRAC	2 cut(s)	348, 546
MnlI	CCTC	8 cut(s)	246, 262, 283, 479, 493, 597, 607, 876
MseI	TTAA	5 cut(s)	27, 161, 509, 714, 837
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	856
MspCI	CTTAAG	2 cut(s)	713, 836
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	2 cut(s)	50, 80
NdeII	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
NlaIII	CATG	7 cut(s)	242, 254, 434, 466, 563, 608, 647
NlaIV	GGNNCC	1 cut(s)	812
NspI	RCATGY	1 cut(s)	608
PagI	TCATGA	1 cut(s)	238
PciI	ACATGT	1 cut(s)	604
PfeI	GAWTC	4 cut(s)	58, 100, 254, 398
PkrI	GCNGC	2 cut(s)	43, 858
PleI	GAGTC	2 cut(s)	301, 526
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	2 cut(s)	301, 526
Ppu21I	YACGTR	1 cut(s)	437
PscI	ACATGT	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	210
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	812
PspOMI	GGGCCC	1 cut(s)	810
PspPI	GGNCC	3 cut(s)	542, 810, 811
PsuI	RGATCY	2 cut(s)	379, 478
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	857
SaqAI	TTAA	5 cut(s)	27, 161, 509, 714, 837
SatI	GCNGC	2 cut(s)	42, 857
Sau3AI	GATC	7 cut(s)	379, 424, 478, 574, 640, 687, 846
Sau96I	GGNCC	3 cut(s)	542, 810, 811
SchI	GAGTC	2 cut(s)	302, 527
SduI	GDGCHC	2 cut(s)	210, 814
SfaNI	GCATC	5 cut(s)	70, 184, 232, 768, 850
Sfr303I	CCGCGG	1 cut(s)	857
SgrBI	CCGCGG	1 cut(s)	857
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	3 cut(s)	48, 713, 836
SmoI	CTYRAG	3 cut(s)	48, 713, 836
SsiI	CCGC	2 cut(s)	854, 856
SstI	GAGCTC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	849
TauI	GCSGC	1 cut(s)	859
TfiI	GAWTC	4 cut(s)	58, 100, 254, 398
Tru1I	TTAA	5 cut(s)	27, 161, 509, 714, 837
Tru9I	TTAA	5 cut(s)	27, 161, 509, 714, 837
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	288, 351, 411, 419
TspGWI	ACGGA	1 cut(s)	372
Vha464I	CTTAAG	2 cut(s)	713, 836
XceI	RCATGY	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.