Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

17655658 .. 17657270

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25742.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTGCCTGTTGATAATCTCAATCCAAGCTCTATTCCACATGTTATAGTTCCAGTCCTAAATCCTTTAACACAACATCCAGTTCCAATCCCAGAAGATGAAGACGCCTCAAATAAGAAGCAAAAAAAATGTGAAGCTTGGGCACATTATAAAATGATGAAGAAGAAGAATGGTGTGACTGATAGGGATGATAGAGCCATGTGCAATTATTGTCGTACGCTAATTATGTACGCTTCTAGGAAGAATGGAACAAGTGCCAACGGTAAACATCTTAAGATTTGTAAAAAATCACCATTATATGAGGTGAAAGACAAAAGGCAGAGTACCTTAAGATTTGAAAAGGCAAAAGATGGAACGGCTAAGGTGAAGGCATGGAAGTTTAACCAGGACAAAGCTAAACTTATGTGTGTAAGGTACATCATAAAAGTCATAAGAGACGAGCTTCTGTTTAGTCATGTTGAGAAGCTGGGTTTCATAGATTTTATGGATGAAATATGTCCAGACTTCATAATTTTGAAGCGTAAAGCAATTGCCAAAGCAATATGGAGCCTTTTCCTGGAAGAGAAATTGAAGTTGAATGACCCAAAAACTGGAGATCAAAAGCAAGTAGGGCCTCCTGATAGTGCTGATTGGGAAAATGCTTCAAAATCAATTTATGAAGCTACCCTGCATCTTAGTGCTTCAAAATCAATTACGTCGAATCAAGTTGCAAAAGTTATGAAGCTGAAATTTTACAAGTATTGGGGAAAGTTTGAGAAAGTAAATCACCTTATGCTTGTAGCCAATGCTCTTGATCCCTGTTGGAAGTTAGACTACATTCCATATTGTTATACTGATGTGGGAACTAAGCAAGAGGATATTGAGCAGATTTCTTCTCAACTGAAGGAGCTACTTATGAAGCTATATAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

305

Amino Acids

35.11

Weight (kDa)

9.27

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	224 - 299	2e-11	hAT-like transposase, RNase-H fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	590
AclWI	GGATC	1 cut(s)	788
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	902
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	4 cut(s)	217, 230, 325, 416
AfiI	CCNNNNNNNGG	2 cut(s)	556, 590
AflII	CTTAAG	2 cut(s)	272, 328
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	6 cut(s)	338, 517, 571, 577, 645, 684
AjnI	CCWGG	2 cut(s)	384, 555
AluBI	AGCT	9 cut(s)	30, 137, 395, 442, 466, 662, 724, 889, 901
AluI	AGCT	9 cut(s)	30, 137, 395, 442, 466, 662, 724, 889, 901
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	788
AoxI	GGCC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	4 cut(s)	282, 316, 376, 758
BaeGI	GKGCMC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BbsI	GAAGAC	1 cut(s)	108
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	2 cut(s)	386, 557
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	237
BfrI	CTTAAG	2 cut(s)	272, 328
Bme1390I	CCNGG	2 cut(s)	386, 557
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	6, 548
BmrFI	CCNGG	2 cut(s)	386, 557
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 590
Bse1I	ACTGG	3 cut(s)	53, 80, 595
BseBI	CCWGG	2 cut(s)	386, 557
BseGI	GGATG	3 cut(s)	76, 193, 493
BseLI	CCNNNNNNNGG	2 cut(s)	556, 590
BseNI	ACTGG	3 cut(s)	53, 80, 595
BseSI	GKGCMC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	613
BshNI	GGYRCC	1 cut(s)	4
BsiWI	CGTACG	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	556, 590
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	595, 793
BspANI	GGCC	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	6, 548
BspPI	GGATC	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	2 cut(s)	272, 328
BsrI	ACTGG	3 cut(s)	53, 80, 595
BssMI	GATC	2 cut(s)	595, 793
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	386, 557
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	2 cut(s)	272, 328
BstDEI	CTNAG	3 cut(s)	360, 674, 846
BstF5I	GGATG	3 cut(s)	76, 193, 493
BstKTI	GATC	2 cut(s)	598, 796
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	2 cut(s)	595, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	610
BstNI	CCWGG	2 cut(s)	386, 557
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	384, 555
BstSLI	GKGCMC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	76, 193, 493
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	4 cut(s)	216, 229, 324, 415
CviAII	CATG	4 cut(s)	41, 199, 372, 455
CviQI	GTAC	4 cut(s)	216, 229, 324, 415
DdeI	CTNAG	3 cut(s)	360, 674, 846
DpnI	GATC	2 cut(s)	597, 795
DpnII	GATC	2 cut(s)	595, 793
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	902
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	384, 555
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	4 cut(s)	44, 202, 375, 458
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	4 cut(s)	40, 198, 371, 454
FokI	GGATG	3 cut(s)	63, 200, 500
FspBI	CTAG	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	613
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	44, 202, 375, 458
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	1 cut(s)	700
HphI	GGTGA	4 cut(s)	282, 316, 376, 758
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	500, 617, 791
Hpy8I	GTNNAC	1 cut(s)	266
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	2 cut(s)	361, 877
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	3 cut(s)	204, 670, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	610
HpyF3I	CTNAG	3 cut(s)	360, 674, 846
HpySE526I	ACGT	1 cut(s)	695
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	44, 202, 375, 458
Kzo9I	GATC	2 cut(s)	595, 793
LmnI	GCTCC	2 cut(s)	546, 886
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	597, 795
MboI	GATC	2 cut(s)	595, 793
MboII	GAAGA	8 cut(s)	107, 113, 172, 175, 178, 253, 572, 864
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	8 cut(s)	205, 222, 510, 528, 566, 651, 690, 728
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	4 cut(s)	118, 295, 624, 847
MseI	TTAA	4 cut(s)	68, 273, 329, 381
MslI	CAYNNNNRTG	1 cut(s)	675
MspCI	CTTAAG	2 cut(s)	272, 328
MspR9I	CCNGG	2 cut(s)	386, 557
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	386, 557
MwoI	GCNNNNNNNGC	1 cut(s)	610
NdeII	GATC	2 cut(s)	595, 793
NlaIII	CATG	4 cut(s)	44, 202, 375, 458
NlaIV	GGNNCC	2 cut(s)	6, 548
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	44
PciI	ACATGT	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	700
Pfl23II	CGTACG	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	555
PscI	ACATGT	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	384, 555
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	2 cut(s)	384, 555
PspLI	CGTACG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	6, 548
PspPI	GGNCC	1 cut(s)	611
RsaI	GTAC	4 cut(s)	217, 230, 325, 416
RsaNI	GTAC	4 cut(s)	216, 229, 324, 415
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	68, 273, 329, 381
Sau3AI	GATC	2 cut(s)	595, 793
Sau96I	GGNCC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	386, 557
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	272, 328
SmoI	CTYRAG	2 cut(s)	272, 328
Sse9I	AATT	8 cut(s)	205, 222, 510, 528, 566, 651, 690, 728
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	384, 555
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	1 cut(s)	698
TasI	AATT	8 cut(s)	205, 222, 510, 528, 566, 651, 690, 728
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	4 cut(s)	68, 273, 329, 381
Tru9I	TTAA	4 cut(s)	68, 273, 329, 381
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	8 cut(s)	114, 173, 463, 496, 504, 672, 734, 911
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	2 cut(s)	272, 328
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.