Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8336117.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

35 .. 945

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8336117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggcttctacaagtaggtcaggaagtcgttgttgttcatccccgtccataacatccaacatggttagtgaaagtgctcaaccaacaatggtttccccaaatactaacctaaaccctataccagtattagaaaacattaccccggactcagttcctgttccaaccccaaatactacaccaaatttagatcctacctcagtggaagacactgcggggctggggaaaaggaaaacacaagaaaagaccacaaagggtaggaaaaagagtcaagtctgggattgtttcactaggcctttgctccctgatggcaaggctgacccagataatgcccaatgcaactattgtaaggcaatagttcctgcatctagttccaaaaatggaaccagttcttgctggtcccatgctagaaactgcaaggttaatcctctttttgagaaaccaatcgacaaagggcagactatcttatgtagggataatataactggggctccacaatatcacagattcaatcagggtaggatagatcagaagttgtacaaaatgatcataagggatgaacttccctttaggcatgtagagggttttgggtttagggaatttatggaagaagctcagccacaatggattcaaccaagtaggaagttagtggccaagggagtgtgggaattgtacaaatctgaaaagaccaagatgatgtcgatctttgcacaccatgcaaaaagatcacaaaggggaagatatagggaggattctggagcagtgtttgagggaatgggatatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

261

Amino Acids

29.25

Weight (kDa)

9.33

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	181, 596
AfaI	GTAC	2 cut(s)	536, 671
AgsI	TTSAA	2 cut(s)	508, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	290, 648
ApoI	RAATTY	2 cut(s)	181, 596
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	3 cut(s)	288, 366, 405
BlpI	GCTNAGC	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	3 cut(s)	382, 398, 489
BmrFI	CCNGG	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	371
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	141, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bse1I	ACTGG	3 cut(s)	122, 384, 487
Bse8I	GATNNNNATC	1 cut(s)	698
BseDI	CCNNGG	2 cut(s)	141, 651
BseGI	GGATG	3 cut(s)	38, 53, 559
BseJI	GATNNNNATC	1 cut(s)	698
BseMII	CTCAG	3 cut(s)	162, 210, 626
BseNI	ACTGG	3 cut(s)	122, 384, 487
BseYI	CCCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	292, 650
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	292, 650
Bsp1286I	GDGCHC	2 cut(s)	79, 490
Bsp1407I	TGTACA	2 cut(s)	534, 669
Bsp143I	GATC	5 cut(s)	187, 523, 543, 699, 722
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	292, 650
BspCNI	CTCAG	3 cut(s)	161, 209, 625
BspLI	GGNNCC	3 cut(s)	382, 398, 489
BspPI	GGATC	1 cut(s)	182
BsrGI	TGTACA	2 cut(s)	534, 669
BsrI	ACTGG	3 cut(s)	122, 384, 487
BssECI	CCNNGG	2 cut(s)	141, 651
BssMI	GATC	5 cut(s)	187, 523, 543, 699, 722
BssT1I	CCWWGG	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	2 cut(s)	534, 669
BstDEI	CTNAG	3 cut(s)	148, 196, 612
BstF5I	GGATG	3 cut(s)	38, 53, 559
BstKTI	GATC	5 cut(s)	190, 526, 546, 702, 725
BstMBI	GATC	5 cut(s)	187, 523, 543, 699, 722
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	292, 650
BtsCI	GGATG	3 cut(s)	38, 53, 559
BtsI	GCAGTG	2 cut(s)	207, 765
BtsIMutI	CAGTG	3 cut(s)	204, 207, 765
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	535, 670
CviAII	CATG	4 cut(s)	61, 401, 572, 713
CviJI	RGCY	8 cut(s)	5, 217, 292, 314, 488, 611, 616, 650
CviKI_1	RGCY	8 cut(s)	5, 217, 292, 314, 488, 611, 616, 650
CviQI	GTAC	2 cut(s)	535, 670
DdeI	CTNAG	3 cut(s)	148, 196, 612
DpnI	GATC	5 cut(s)	189, 525, 545, 701, 724
DpnII	GATC	5 cut(s)	187, 523, 543, 699, 722
EaeI	YGGCCR	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	64, 404, 575, 716
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	4 cut(s)	60, 400, 571, 712
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	543
FokI	GGATG	3 cut(s)	25, 40, 566
FriOI	GRGCYC	1 cut(s)	490
FspBI	CTAG	3 cut(s)	288, 366, 405
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	292, 650
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	4 cut(s)	64, 404, 575, 716
HinfI	GANTC	5 cut(s)	146, 265, 504, 625, 749
HpaII	CCGG	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	528, 679
Hpy188III	TCNNGA	2 cut(s)	21, 753
HpyCH4V	TGCA	5 cut(s)	336, 362, 414, 707, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	3 cut(s)	148, 196, 612
Hsp92II	CATG	4 cut(s)	64, 404, 575, 716
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	5 cut(s)	187, 523, 543, 699, 722
LmnI	GCTCC	3 cut(s)	303, 493, 755
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	3 cut(s)	288, 366, 405
MalI	GATC	5 cut(s)	189, 525, 545, 701, 724
MboI	GATC	5 cut(s)	187, 523, 543, 699, 722
MboII	GAAGA	3 cut(s)	215, 617, 747
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	79, 490
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	3 cut(s)	181, 596, 665
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	140, 274
MmeI	TCCRAC	2 cut(s)	81, 185
MnlI	CCTC	5 cut(s)	205, 435, 571, 739, 760
Mox20I	TGGCCA	1 cut(s)	650
MroXI	GAANNNNTTC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	5 cut(s)	187, 523, 543, 699, 722
NlaIII	CATG	4 cut(s)	64, 404, 575, 716
NlaIV	GGNNCC	3 cut(s)	382, 398, 489
NspI	RCATGY	1 cut(s)	575
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	504, 625, 749
PleI	GAGTC	2 cut(s)	140, 273
PpsI	GAGTC	2 cut(s)	140, 273
PspFI	CCCAGC	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	382, 398, 489
PspPI	GGNCC	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	536, 671
RsaNI	GTAC	2 cut(s)	535, 670
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	5 cut(s)	187, 523, 543, 699, 722
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	2 cut(s)	140, 274
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	79, 490
SetI	ASST	5 cut(s)	20, 111, 197, 420, 613
SfaNI	GCATC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	396
Sse9I	AATT	3 cut(s)	181, 596, 665
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	3 cut(s)	288, 366, 405
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	651
TaqI	TCGA	2 cut(s)	444, 698
TasI	AATT	3 cut(s)	181, 596, 665
TatI	WGTACW	2 cut(s)	534, 669
TfiI	GAWTC	3 cut(s)	504, 625, 749
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	204, 214, 765
TspDTI	ATGAA	2 cut(s)	27, 570
TspRI	CASTG	3 cut(s)	204, 214, 765
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	181, 596
XceI	RCATGY	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	3 cut(s)	288, 366, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.