Rh5CG344300

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001336
Physical Location & Seq
Forward (+)
39601650 .. 39602866
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG344300.1

Sequence Viewer

Length: 573 bp
ATGGCTTCTACAAGTAGGTCAGGAAGTCATTGTTGTTCATCCCCTTCTATTGGTTCTAACATGGTTACTGCAAGTTGTCAATCAATAGGTGTTCCCCCAAATAACGACCAAAACACTATACCACCAGTAGAAAACATTGCCCCTAACTCAGTTCCTATTCCAACCCCAACTGAAACACCAAATCCAGAACCTCAATCGGGGGAAGCTACTGCGGGGTTGGGGAAAAGAAGGTGTCAAGATAAGACCACAAAGGGTAGGAAACAGAGTCGAGTGTGGGACTGTTTCACAAGGCCTTTGCTCCCTGATGGCAAGCCTGACCCCGATAATGCACAATGTAATTACTGTAAAGCAATAGTTCCTGCCTCTAGTTCAAAGAATGGAACCAGTTCTTGCTGGTCACATGGAAGAAATTGCAAGGTTAACCCTTTATTTGAGAAACCTATCGAGAAAGGGCAGACTATATTATGTAGGGATAATGTAACCGGGGCTCCACAATATCACAAATTTAATCAAGGTAGCCTAATTTCTATTCCGAACCAACAACGGATGAGCTGTCCTTGTATAAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

190

Amino Acids

20.45

Weight (kDa)

8.98

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 50, 197
AgsI TTSAA 1 cut(s) 372
AluBI AGCT 2 cut(s) 206, 552
AluI AGCT 2 cut(s) 206, 552
AoxI GGCC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 484
BanII GRGCYC 1 cut(s) 490
BccI CCATC 1 cut(s) 299
BcnI CCSGG 1 cut(s) 484
BfaI CTAG 2 cut(s) 366, 571
Bme1390I CCNGG 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 382, 489
BmrFI CCNGG 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 197
Bse1I ACTGG 2 cut(s) 125, 384
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 2 cut(s) 38, 552
BseLI CCNNNNNNNGG 2 cut(s) 50, 197
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 125, 384
BshFI GGCC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 483
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 50, 197
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 567
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 382, 489
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 2 cut(s) 125, 384
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 1 cut(s) 567
Bst4CI ACNGT 2 cut(s) 281, 344
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 148
BstF5I GGATG 2 cut(s) 38, 552
BstKTI GATC 1 cut(s) 570
BstMBI GATC 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 38, 552
Cac8I GCNNGC 1 cut(s) 311
CviAII CATG 2 cut(s) 61, 401
CviJI RGCY 7 cut(s) 5, 206, 292, 313, 488, 519, 552
CviKI_1 RGCY 7 cut(s) 5, 206, 292, 313, 488, 519, 552
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 569
DpnII GATC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 490
FaeI CATG 2 cut(s) 64, 404
FaiI YATR 6 cut(s) 62, 119, 402, 461, 466, 563
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 60, 400
FauI CCCGC 1 cut(s) 205
FokI GGATG 2 cut(s) 25, 559
FriOI GRGCYC 1 cut(s) 490
FspBI CTAG 2 cut(s) 366, 571
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 483
Hin1II CATG 2 cut(s) 64, 404
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 1 cut(s) 265
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 1 cut(s) 483
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 534
Hpy188III TCNNGA 4 cut(s) 21, 185, 236, 445
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 54, 222
HpyCH4III ACNGT 2 cut(s) 281, 344
HpyCH4V TGCA 3 cut(s) 71, 329, 414
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 2 cut(s) 64, 404
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 303, 493
LpnPI CCDG 9 cut(s) 6, 138, 198, 315, 327, 372, 379, 397, 496
MaeI CTAG 2 cut(s) 366, 571
MaeIII GTNAC 3 cut(s) 64, 396, 478
MalI GATC 1 cut(s) 569
MboI GATC 1 cut(s) 567
MboII GAAGA 1 cut(s) 417
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 4 cut(s) 337, 409, 503, 522
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 2 cut(s) 201, 373
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 2 cut(s) 420, 507
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 484
NciI CCSGG 1 cut(s) 484
NdeII GATC 1 cut(s) 567
NlaIII CATG 2 cut(s) 64, 404
NlaIV GGNNCC 2 cut(s) 382, 489
NmuCI GTSAC 1 cut(s) 396
PceI AGGCCT 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 385
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 382, 489
PsuI RGATCY 1 cut(s) 567
SaqAI TTAA 2 cut(s) 420, 507
Sau3AI GATC 1 cut(s) 567
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 1 cut(s) 490
SetI ASST 9 cut(s) 20, 91, 193, 208, 233, 420, 442, 517, 554
Sse9I AATT 4 cut(s) 337, 409, 503, 522
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 366, 571
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 281, 344
TaqI TCGA 2 cut(s) 268, 444
TasI AATT 4 cut(s) 337, 409, 503, 522
Tru1I TTAA 2 cut(s) 420, 507
Tru9I TTAA 2 cut(s) 420, 507
TseFI GTSAC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 559
XapI RAATTY 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 2 cut(s) 366, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.