Rroxscaffold_4G00305320

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001336
Physical Location & Seq
Forward (+)
25950545 .. 25950919
375 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00305320.1

Sequence Viewer

Length: 375 bp
ATGGTTACATTGCAAATCGAGATTGACAAGGCTATCATTGCAGAAGACCCTATTTTGAAGAGGGTTGCCACTTCAATGAAGACCAAGTTCAACAAATATTGGGGAAGCTTCGAATCGGTGAACAAGATAATCATGATAGCTAATGTTCTTGACCCAAGATACAAGTGCAAGTGGGCTAAAGTAGCAATGCAAAAAGTCAATGCAAGCTATGAGACAATTCATTCAATACAAGAGGACTTAAAGAAAATTTTGCTGAAGATGTATGATGAATACAAGGCCAATGAAGGCAGCAACGAAGCTGAACCGTACATGGGAGAAGATCTAGGATTCGAAGGGGATGACTTGGAGAATCTTGATGAAGTCGCAAGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

124

Amino Acids

14.23

Weight (kDa)

4.96

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
hAT-like_RNase-H PF14372 2 - 91 4.2e-14 hAT-like transposase, RNase-H fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 4 cut(s) 58, 75, 91, 225
AluBI AGCT 4 cut(s) 108, 140, 207, 299
AluI AGCT 4 cut(s) 108, 140, 207, 299
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 130
AsuII TTCGAA 2 cut(s) 111, 330
BbsI GAAGAC 2 cut(s) 51, 86
BbvI GCAGC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 323
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BpiI GAAGAC 2 cut(s) 51, 86
Bpu14I TTCGAA 2 cut(s) 111, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse3DI GCAATG 3 cut(s) 8, 36, 192
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 3 cut(s) 8, 36, 192
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 278
Bsp119I TTCGAA 2 cut(s) 111, 330
Bsp143I GATC 1 cut(s) 319
BspANI GGCC 1 cut(s) 278
BspHI TCATGA 1 cut(s) 132
BspT104I TTCGAA 2 cut(s) 111, 330
BsrDI GCAATG 3 cut(s) 8, 36, 192
BssMI GATC 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 53
BstBI TTCGAA 2 cut(s) 111, 330
BstC8I GCNNGC 2 cut(s) 205, 367
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 38, 182
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 2 cut(s) 51, 86
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 205, 367
CciI TCATGA 1 cut(s) 132
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 133, 310
CviJI RGCY 7 cut(s) 32, 108, 140, 176, 207, 278, 299
CviKI_1 RGCY 7 cut(s) 32, 108, 140, 176, 207, 278, 299
CviQI GTAC 1 cut(s) 307
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 275
FaeI CATG 2 cut(s) 136, 313
FaiI YATR 4 cut(s) 134, 210, 264, 311
FatI CATG 2 cut(s) 132, 309
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 1 cut(s) 278
Hin1II CATG 2 cut(s) 136, 313
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 3 cut(s) 113, 327, 349
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 4 cut(s) 19, 133, 149, 353
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 278, 326
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 5 cut(s) 13, 41, 168, 190, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 182
Hsp92II CATG 2 cut(s) 136, 313
Kzo9I GATC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 300
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 5 cut(s) 56, 70, 91, 268, 329
MflI RGATCY 1 cut(s) 319
MluCI AATT 2 cut(s) 216, 246
MnlI CCTC 2 cut(s) 54, 226
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 38, 182
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 136, 313
NspV TTCGAA 2 cut(s) 111, 330
PagI TCATGA 1 cut(s) 132
PfeI GAWTC 3 cut(s) 113, 327, 349
PkrI GCNGC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 319
SetI ASST 4 cut(s) 110, 142, 209, 301
SfuI TTCGAA 2 cut(s) 111, 330
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 2 cut(s) 216, 246
SspI AATATT 1 cut(s) 98
SspMI CTAG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 18, 111, 330
TasI AATT 2 cut(s) 216, 246
TfiI GAWTC 3 cut(s) 113, 327, 349
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 5 cut(s) 92, 209, 282, 297, 372
XapI RAATTY 1 cut(s) 246
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.