RchiOBHm_Chr5g0006251

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001336
Physical Location & Seq
Reverse (-)
3895125 .. 3896855
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28738

Sequence Viewer

Length: 789 bp
ATGGCTTCTACAAGTAGGTCAGGAAGTAATTGTTGTTCATCCCCTTCCATAACTTCAAACATGGTTACTGGAAGTTATCAATCTGTTAGTGTTTCCCCAAATGATAACCAAAACCCTTTACCACCAGTAGGTAACTTACCACCAATAGATAATAGTACCCCAACTGAAACACCTAACTTAGTTCCCACTACAACCCCAACTGAAACACCAAATCCAGATCCTGAATCAGTGGAAGCTGCTGCAGGGCTGGGGAAAAGAAAAGGAGTAGATAAGACCACAAAGGGTAGGAAACAGAGTCGAGTATGGGAGTGTTTTACAAGGCATTTGCTCCCTGATGGCAAGCCTGACCCTAGTAATGCACAATGCAACTACTGTAAAGCATTAGTTCCTGCTTTAAGTTCAAAGAATGGAACCAGTTCTTGCTGGTCACATGGAAGAAACTGCAAGGTTAACCCTCTATTTGAGAAACCAATCGAGAAAGGGCAGACCATATTATCTAGGGATAATGTTTCCGGGGCTCCACAATATCACAGATTTAATCAGGGTAGGATAGATGAGAAGCTGTACAAGATGATCATAAGGGATGAACTTCCCTTTAGGCATGTGGAGGGTTTTGGGTTTAAAGCATTTATGTTAGAAGATCAGCCACAGTGGATTCAACCAAGTAGAAAGTTAGTGGCCAATGGAGTATGGGAATTGTACCTATCTGAGAAGGGAAAGATGATGTCGATCTTTTCACAACATGCAAAGAGAGTTAGTGTGATCACTGACACTTGGACATCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

262

Amino Acids

28.94

Weight (kDa)

9.05

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 678
AfaI GTAC 3 cut(s) 157, 566, 701
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 57, 402, 659
AluBI AGCT 2 cut(s) 236, 562
AluI AGCT 2 cut(s) 236, 562
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 2 cut(s) 236, 239
Asp700I GAANNNNTTC 1 cut(s) 415
AsuC2I CCSGG 1 cut(s) 514
BalI TGGCCA 1 cut(s) 680
BanII GRGCYC 1 cut(s) 520
BbvI GCAGC 2 cut(s) 223, 226
BccI CCATC 1 cut(s) 329
BclI TGATCA 2 cut(s) 573, 762
BcnI CCSGG 1 cut(s) 514
BfaI CTAG 2 cut(s) 351, 498
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 237, 240
BlsI GCNGC 2 cut(s) 238, 241
Bme1390I CCNGG 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 412, 519
BmrFI CCNGG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 513
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 73, 125, 414
Bse8I GATNNNNATC 1 cut(s) 728
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 2 cut(s) 38, 589
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 73, 125, 414
BseXI GCAGC 2 cut(s) 223, 226
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 5 cut(s) 217, 573, 640, 729, 762
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 412, 519
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 3 cut(s) 73, 125, 414
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 5 cut(s) 217, 573, 640, 729, 762
Bst4CI ACNGT 2 cut(s) 374, 651
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 178, 708
BstF5I GGATG 2 cut(s) 38, 589
BstKTI GATC 5 cut(s) 220, 576, 643, 732, 765
BstMBI GATC 5 cut(s) 217, 573, 640, 729, 762
BstNSI RCATGY 2 cut(s) 605, 746
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 223, 226
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 680
BtsCI GGATG 2 cut(s) 38, 589
BtsIMutI CAGTG 3 cut(s) 234, 656, 765
Cac8I GCNNGC 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 221
Csp6I GTAC 3 cut(s) 156, 565, 700
CviAII CATG 4 cut(s) 61, 431, 602, 743
CviJI RGCY 8 cut(s) 5, 236, 247, 343, 518, 562, 646, 680
CviKI_1 RGCY 8 cut(s) 5, 236, 247, 343, 518, 562, 646, 680
CviQI GTAC 3 cut(s) 156, 565, 700
DdeI CTNAG 2 cut(s) 178, 708
DpnI GATC 5 cut(s) 219, 575, 642, 731, 764
DpnII GATC 5 cut(s) 217, 573, 640, 729, 762
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 4 cut(s) 64, 434, 605, 746
FatI CATG 4 cut(s) 60, 430, 601, 742
FbaI TGATCA 2 cut(s) 573, 762
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 2 cut(s) 25, 596
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 237, 240
FspBI CTAG 2 cut(s) 351, 498
GluI GCNGC 2 cut(s) 237, 240
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 680
HapII CCGG 1 cut(s) 513
Hin1II CATG 4 cut(s) 64, 434, 605, 746
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 3 cut(s) 224, 295, 655
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 1 cut(s) 513
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 4 cut(s) 21, 215, 221, 475
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 54, 706
HpyCH4III ACNGT 2 cut(s) 374, 651
HpyCH4V TGCA 5 cut(s) 242, 359, 366, 444, 746
HpyF3I CTNAG 2 cut(s) 178, 708
Hsp92II CATG 4 cut(s) 64, 434, 605, 746
Ksp22I TGATCA 2 cut(s) 573, 762
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 5 cut(s) 217, 573, 640, 729, 762
LmnI GCTCC 2 cut(s) 333, 523
Lsp1109I GCAGC 2 cut(s) 223, 226
MaeI CTAG 2 cut(s) 351, 498
MaeIII GTNAC 3 cut(s) 64, 131, 426
MalI GATC 5 cut(s) 219, 575, 642, 731, 764
MboI GATC 5 cut(s) 217, 573, 640, 729, 762
MboII GAAGA 2 cut(s) 447, 650
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 3 cut(s) 28, 695, 783
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 2 cut(s) 465, 601
Mox20I TGGCCA 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 415
MscI TGGCCA 1 cut(s) 680
MseI TTAA 4 cut(s) 395, 450, 537, 621
Msp20I TGGCCA 1 cut(s) 680
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 514
NciI CCSGG 1 cut(s) 514
NdeII GATC 5 cut(s) 217, 573, 640, 729, 762
NlaIII CATG 4 cut(s) 64, 434, 605, 746
NlaIV GGNNCC 2 cut(s) 412, 519
NmuCI GTSAC 1 cut(s) 426
NspI RCATGY 2 cut(s) 605, 746
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 224, 655
PkrI GCNGC 2 cut(s) 238, 241
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 412, 519
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 3 cut(s) 157, 566, 701
RsaNI GTAC 3 cut(s) 156, 565, 700
SaqAI TTAA 4 cut(s) 395, 450, 537, 621
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 5 cut(s) 217, 573, 640, 729, 762
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 520
SetI ASST 7 cut(s) 20, 133, 175, 238, 450, 564, 705
SfcI CTRYAG 1 cut(s) 240
Sse9I AATT 3 cut(s) 28, 695, 783
SspMI CTAG 2 cut(s) 351, 498
StyD4I CCNGG 1 cut(s) 512
TaaI ACNGT 2 cut(s) 374, 651
TaqI TCGA 3 cut(s) 298, 474, 728
TasI AATT 3 cut(s) 28, 695, 783
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 224, 655
Tru1I TTAA 4 cut(s) 395, 450, 537, 621
Tru9I TTAA 4 cut(s) 395, 450, 537, 621
TscAI CASTG 3 cut(s) 234, 656, 772
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 2 cut(s) 236, 239
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 27, 600
TspRI CASTG 3 cut(s) 234, 656, 772
XceI RCATGY 2 cut(s) 605, 746
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 2 cut(s) 351, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.