Rh7AG471400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001336
Physical Location & Seq
Reverse (-)
65365525 .. 65367520
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG471400.1

Sequence Viewer

Length: 324 bp
ATGCGATATCTCACAGATTTGGTGACGGAAAAATTACTATTTTACCGAGCATTGAAGGCTTCAAGCTCGAGCAGAATAGGAGCATTGGAGCAAAAATTTGGAGCACGAGCTATGGGTACACAAAGTGGAAATTTGAGTCAAACCAGTAGCTCAAGCCCTTCTATTAGTTATGCCATGCATATAGAGTATACTGCAGCTTTAGGGCAATCTCCTATAGGACCAACCACTCAAACACTCCCACCTTCAGCTATAGGTTCAGGTTCATGTGTTGAATTTGAACCTGGCAGTGACAACATACATCCTCTTTTTTGTTCTTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.32

Weight (kDa)

6.7

Isoelectric Point (pI)

68.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 188
AcsI RAATTY 3 cut(s) 95, 130, 272
AcuI CTGAAG 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 4 cut(s) 55, 63, 272, 278
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 5 cut(s) 66, 110, 150, 197, 248
AluI AGCT 5 cut(s) 66, 110, 150, 197, 248
Alw21I GWGCWC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 3 cut(s) 95, 130, 272
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 282
BfmI CTRYAG 3 cut(s) 192, 213, 249
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 144
BssNAI GTATAC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 3 cut(s) 192, 213, 249
BstV1I GCAGC 1 cut(s) 206
BstZ17I GTATAC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 175, 264
CviJI RGCY 7 cut(s) 59, 66, 110, 150, 156, 197, 248
CviKI_1 RGCY 7 cut(s) 59, 66, 110, 150, 156, 197, 248
CviQI GTAC 1 cut(s) 117
DraIII CACNNNGTG 1 cut(s) 125
Eco32I GATATC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 180
FaeI CATG 2 cut(s) 178, 267
FatI CATG 2 cut(s) 174, 263
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 178, 267
HinfI GANTC 1 cut(s) 136
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 119, 189
Hpy8I GTNNAC 2 cut(s) 119, 189
HpyAV CCTTC 3 cut(s) 49, 168, 252
HpyCH4V TGCA 3 cut(s) 178, 194, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 178, 267
LmnI GCTCC 3 cut(s) 80, 88, 101
LpnPI CCDG 4 cut(s) 157, 243, 267, 294
Lsp1109I GCAGC 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 22, 287
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 4 cut(s) 32, 95, 130, 272
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 178, 267
NmuCI GTSAC 2 cut(s) 22, 287
NsiI ATGCAT 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 67
PstI CTGCAG 1 cut(s) 196
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 106
SetI ASST 9 cut(s) 68, 112, 152, 199, 244, 250, 256, 262, 283
SfcI CTRYAG 3 cut(s) 192, 213, 249
Sfr274I CTCGAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 67, 151
SmoI CTYRAG 2 cut(s) 67, 151
Sse9I AATT 4 cut(s) 32, 95, 130, 272
StyD4I CCNGG 1 cut(s) 280
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 32, 95, 130, 272
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 2 cut(s) 22, 287
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 2 cut(s) 22, 287
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 3 cut(s) 95, 130, 272
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.