Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

30369051 .. 30370844

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGGGCAATCTATGGGAATGTAGCCACTGTAAATCCTTTGGATCCTGGTAGTGCTTCTACACATCAAAATGTCGCCCATGTACAGTCGCAATGTCATGGCCCAGGGGATGCGTCCAAGGGATTTTCCTTTCAGTTTGGGTCCATAAGTCCTGGTTTGATGAATGGGATGCAGATTCCTGCTCGAGCTAGCTCAGCTCCCCCAACTTTGGATGAGCAGAAACGTGATCAGGCACGGCTTGAGTCCTTTAGACCTGCACCGTCATTGCCAACCGCTGCAGTTCCTAAGCAGCTACCGAGGAAATATCAACCTTTTGTCGACCAATCTAGTGCTGCTAAGGCTCATCTGCAACCCAAGGCCAAAAAGGATGTGCAAGTCTCACCTACAACGACTGCTAGCCAAAGTCAGAAACCTTCTGGTCCTCCAATGCCTGGGATCCCTATGTCAATGCCATTTCATCAGCCACAGGTTTCTGTGCAGTTTGGTGGCCCCAACCAGCAGATTCAGTCTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

172

Amino Acids

18.24

Weight (kDa)

9.93

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	4 cut(s)	38, 51, 430, 443
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	208, 431
AjnI	CCWGG	4 cut(s)	46, 103, 151, 430
AluBI	AGCT	4 cut(s)	188, 192, 197, 292
AluI	AGCT	4 cut(s)	188, 192, 197, 292
Alw26I	GTCTC	2 cut(s)	382, 513
AlwI	GGATC	4 cut(s)	38, 51, 430, 443
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	100, 357, 487
ApeKI	GCWGC	3 cut(s)	275, 289, 332
AspS9I	GGNCC	4 cut(s)	101, 141, 419, 488
AsuHPI	GGTGA	1 cut(s)	372
AsuNHI	GCTAGC	2 cut(s)	188, 395
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	141, 419
BamHI	GGATCC	2 cut(s)	43, 435
BbvI	GCAGC	3 cut(s)	262, 301, 319
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	4 cut(s)	48, 105, 153, 432
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	382, 513
BfaI	CTAG	3 cut(s)	189, 327, 396
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	276, 290, 333
BlpI	GCTNAGC	1 cut(s)	193
BlsI	GCNGC	3 cut(s)	277, 291, 334
Bme1390I	CCNGG	4 cut(s)	48, 105, 153, 432
Bme18I	GGWCC	2 cut(s)	141, 419
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	4 cut(s)	101, 141, 419, 488
BmiI	GGNNCC	4 cut(s)	45, 142, 437, 490
BmrFI	CCNGG	4 cut(s)	48, 105, 153, 432
BmsI	GCATC	2 cut(s)	100, 159
BmtI	GCTAGC	2 cut(s)	192, 399
Bpu10I	CCTNAGC	2 cut(s)	285, 336
Bpu1102I	GCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	6 cut(s)	103, 104, 117, 296, 354, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 431
Bse3DI	GCAATG	2 cut(s)	98, 263
BseBI	CCWGG	4 cut(s)	48, 105, 153, 432
BseDI	CCNNGG	6 cut(s)	103, 104, 117, 296, 354, 431
BseGI	GGATG	4 cut(s)	115, 174, 217, 373
BseLI	CCNNNNNNNGG	2 cut(s)	208, 431
BseMI	GCAATG	2 cut(s)	98, 263
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	262, 301, 319
BsgI	GTGCAG	2 cut(s)	240, 497
BshFI	GGCC	3 cut(s)	102, 359, 489
BsiHKCI	CYCGRG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	208, 431
BsmAI	GTCTC	2 cut(s)	382, 513
BsnI	GGCC	3 cut(s)	102, 359, 489
BsoBI	CYCGRG	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	43, 226, 435
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	3 cut(s)	102, 359, 489
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	45, 142, 437, 490
BspMAI	CTGCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	262
BspOI	GCTAGC	2 cut(s)	192, 399
BspPI	GGATC	4 cut(s)	38, 51, 430, 443
BsrDI	GCAATG	2 cut(s)	98, 263
BsrGI	TGTACA	1 cut(s)	82
BssECI	CCNNGG	6 cut(s)	103, 104, 117, 296, 354, 431
BssMI	GATC	3 cut(s)	43, 226, 435
BssT1I	CCWWGG	2 cut(s)	117, 354
Bst2UI	CCWGG	4 cut(s)	48, 105, 153, 432
Bst4CI	ACNGT	3 cut(s)	31, 87, 261
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	190, 397
BstDEI	CTNAG	3 cut(s)	193, 285, 336
BstF5I	GGATG	4 cut(s)	115, 174, 217, 373
BstKTI	GATC	3 cut(s)	46, 229, 438
BstMAI	GTCTC	2 cut(s)	382, 513
BstMBI	GATC	3 cut(s)	43, 226, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 338
BstNI	CCWGG	4 cut(s)	48, 105, 153, 432
BstSCI	CCNGG	4 cut(s)	46, 103, 151, 430
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	262, 301, 319
BstX2I	RGATCY	2 cut(s)	43, 435
BstYI	RGATCY	2 cut(s)	43, 435
BsuRI	GGCC	3 cut(s)	102, 359, 489
BtsCI	GGATG	4 cut(s)	115, 174, 217, 373
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	190, 397
Cfr13I	GGNCC	4 cut(s)	101, 141, 419, 488
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	80, 98
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	3 cut(s)	193, 285, 336
DpnI	GATC	3 cut(s)	45, 228, 437
DpnII	GATC	3 cut(s)	43, 226, 435
Eco130I	CCWWGG	2 cut(s)	117, 354
Eco47I	GGWCC	2 cut(s)	141, 419
Eco88I	CYCGRG	1 cut(s)	183
EcoRII	CCWGG	4 cut(s)	46, 103, 151, 430
EcoT14I	CCWWGG	2 cut(s)	117, 354
ErhI	CCWWGG	2 cut(s)	117, 354
FaeI	CATG	2 cut(s)	83, 101
FaiI	YATR	5 cut(s)	15, 81, 99, 146, 443
FatI	CATG	2 cut(s)	79, 97
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	276, 290, 333
FokI	GGATG	4 cut(s)	122, 181, 224, 380
Fsp4HI	GCNGC	3 cut(s)	276, 290, 333
FspBI	CTAG	3 cut(s)	189, 327, 396
GluI	GCNGC	3 cut(s)	276, 290, 333
HaeIII	GGCC	3 cut(s)	102, 359, 489
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	83, 101
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	175, 242, 502
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	408
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	3 cut(s)	31, 87, 261
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	172, 257, 278, 349, 373, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 338
HpyF3I	CTNAG	3 cut(s)	193, 285, 336
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	83, 101
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	43, 226, 435
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	3 cut(s)	262, 301, 319
LweI	GCATC	2 cut(s)	100, 159
MaeI	CTAG	3 cut(s)	189, 327, 396
MaeII	ACGT	1 cut(s)	223
MalI	GATC	3 cut(s)	45, 228, 437
MboI	GATC	3 cut(s)	43, 226, 435
MflI	RGATCY	2 cut(s)	43, 435
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	2 cut(s)	291, 432
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	4 cut(s)	48, 105, 153, 432
MvaI	CCWGG	4 cut(s)	48, 105, 153, 432
MwoI	GCNNNNNNNGC	2 cut(s)	194, 338
NdeII	GATC	3 cut(s)	43, 226, 435
NheI	GCTAGC	2 cut(s)	188, 395
NlaIII	CATG	2 cut(s)	83, 101
NlaIV	GGNNCC	4 cut(s)	45, 142, 437, 490
PaeR7I	CTCGAG	1 cut(s)	183
PasI	CCCWGGG	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	175, 502
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	277, 291, 334
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	4 cut(s)	46, 103, 151, 430
PspGI	CCWGG	4 cut(s)	46, 103, 151, 430
PspN4I	GGNNCC	4 cut(s)	45, 142, 437, 490
PspPI	GGNCC	4 cut(s)	101, 141, 419, 488
PspXI	VCTCGAGB	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	43, 435
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	317
SatI	GCNGC	3 cut(s)	276, 290, 333
Sau3AI	GATC	3 cut(s)	43, 226, 435
Sau96I	GGNCC	4 cut(s)	101, 141, 419, 488
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	4 cut(s)	48, 105, 153, 432
SfaNI	GCATC	2 cut(s)	100, 159
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	141, 419
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	183, 239
SmoI	CTYRAG	2 cut(s)	183, 239
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	3 cut(s)	189, 327, 396
StyD4I	CCNGG	4 cut(s)	46, 103, 151, 430
StyI	CCWWGG	2 cut(s)	117, 354
TaaI	ACNGT	3 cut(s)	31, 87, 261
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	184, 318
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	175, 502
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	3 cut(s)	275, 289, 332
TspDTI	ATGAA	2 cut(s)	176, 446
TspRI	CASTG	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	141, 419
XhoI	CTCGAG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	3 cut(s)	189, 327, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.