Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001153.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1668

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001153.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgccgaaaccagccgtaccgccgccgtcggtgccgactgagatggtaaccggaagatacggttcggtttaccgtaccgtactacttgtacgcggctcggtatcgaccatggcttctagcagtaggtcaggaagtaattgttgttcatccccgtccataacttcaaacatggttactggaagttatcaatctgttagtgtttccccaaatgataaccaaaaccctttaccaccagtaggtaacttaccaccaatagataatagtaccccaactgaaacacctaacttagttcccactacaaccccaactgaaacaccaaatccagatcctgaattggtggaagctactgcggggttggggaaaagaaaaggagtagataagaccacaaagggtaggaaacaaagtcgagtatgggagtgttttacaaggcctttgctccctgatggcaagcctgaccctagtaatgcacaatgcaactactgtaaagcattagttcctacgttaagttcaaagaatggaaccagttcttgctggtcacatggaagaaactgcaaggttaaccctctatttgagaaacca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

193

Amino Acids

20.5

Weight (kDa)

9.16

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	20, 23, 93, 350
AclWI	GGATC	1 cut(s)	320
AfaI	GTAC	5 cut(s)	18, 76, 81, 90, 265
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	165, 510
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	31
BccI	CCATC	2 cut(s)	37, 437
BceAI	ACGGC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	117, 459
BisI	GCNGC	2 cut(s)	23, 94
BlsI	GCNGC	2 cut(s)	24, 95
BmiI	GGNNCC	2 cut(s)	33, 520
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	181, 233, 522
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	3 cut(s)	181, 233, 522
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	325
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	4 cut(s)	20, 23, 93, 350
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	33, 520
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	181, 233, 522
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	62, 74, 79, 482
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	39, 286
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstPI	GGTNACC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	329
Csp6I	GTAC	5 cut(s)	17, 75, 80, 89, 264
CviAII	CATG	3 cut(s)	109, 169, 539
CviJI	RGCY	6 cut(s)	14, 96, 113, 344, 430, 451
CviKI_1	RGCY	6 cut(s)	14, 96, 113, 344, 430, 451
CviQI	GTAC	5 cut(s)	17, 75, 80, 89, 264
DdeI	CTNAG	2 cut(s)	39, 286
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	112, 172, 542
FaiI	YATR	5 cut(s)	110, 158, 170, 412, 540
FatI	CATG	3 cut(s)	108, 168, 538
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	23, 94
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	23, 94
FspBI	CTAG	2 cut(s)	117, 459
GluI	GCNGC	2 cut(s)	23, 94
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	3 cut(s)	112, 172, 542
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	70, 559
Hpy188III	TCNNGA	3 cut(s)	129, 323, 329
Hpy8I	GTNNAC	2 cut(s)	70, 559
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	4 cut(s)	62, 74, 79, 482
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	3 cut(s)	467, 474, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	39, 286
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	3 cut(s)	112, 172, 542
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	117, 459
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	4 cut(s)	46, 172, 239, 534
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	66, 555
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	2 cut(s)	136, 332
MnlI	CCTC	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	2 cut(s)	503, 558
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	112, 172, 542
NlaIV	GGNNCC	2 cut(s)	33, 520
NmuCI	GTSAC	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	24, 95
PspEI	GGTNACC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	33, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	127, 159
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	5 cut(s)	18, 76, 81, 90, 265
RsaNI	GTAC	5 cut(s)	17, 75, 80, 89, 264
SaqAI	TTAA	2 cut(s)	503, 558
SatI	GCNGC	2 cut(s)	23, 94
Sau3AI	GATC	1 cut(s)	325
SetI	ASST	6 cut(s)	128, 241, 283, 346, 503, 558
Sse9I	AATT	2 cut(s)	136, 332
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	4 cut(s)	20, 23, 93, 350
SspMI	CTAG	2 cut(s)	117, 459
StuI	AGGCCT	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	4 cut(s)	62, 74, 79, 482
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	104, 406
TasI	AATT	2 cut(s)	136, 332
TauI	GCSGC	2 cut(s)	25, 96
Tru1I	TTAA	2 cut(s)	503, 558
Tru9I	TTAA	2 cut(s)	503, 558
TseFI	GTSAC	1 cut(s)	534
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	2 cut(s)	117, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.