Rh4BG221700

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001336
Physical Location & Seq
Reverse (-)
38246154 .. 38250424
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG221700.1

Sequence Viewer

Length: 603 bp
ATGGCTTCTACAAGTAGGTCAGGAAGTCGTTGTTGTTCATCCCCGTCCATAACATCCAACATGGTTAGTGAAAGTGCTCAACCAACAATGGTTTCCCCAAATACTAACCTAAACCCTATACCAGTATTAGAAAACATTACCCCGGACTCAGTTCCTGTTCCAACCCCAAATACTACACCAAATTTAGATCCTACCTCAGTGGAAGACACTGCGGGGCTGGGGAAAAGGAAAACACAAGAAAAGACCACAAAGGGTAGGAAAAAGAGTCAAGTCTGGGATTGTTTCACTAGGCCTTTGCTCCCTGATGGCAAGGCTGACCCAGATAATGCCCAATGCAACTATTGTAAGGCAATAGTTCCTGCATCTAGTTCCAAAAATGGAACCAGTTCTTGCTGGTCCCATGCTAGAAACTGCAAGGTTAATCCTCTTTTTGAGAAACCAATCGACAAAGGGCAGACTATCTTATGTAGGGATAATATAACTGGGGCTCCACAATATCACAGATTCAATCAGGATGGTGTGCTTGCTCAGTTAGGACTTGGGAGCAACAGCTCTTATATATACAAGACCAACATAGAAATTAAGAAACATCAAGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

200

Amino Acids

21.71

Weight (kDa)

8.91

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 181
AgsI TTSAA 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 1 cut(s) 552
AluI AGCT 1 cut(s) 552
Alw21I GWGCWC 1 cut(s) 79
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 2 cut(s) 299, 509
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 3 cut(s) 288, 366, 405
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 3 cut(s) 382, 398, 489
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bse1I ACTGG 3 cut(s) 122, 384, 487
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 38, 53, 520
BseMII CTCAG 3 cut(s) 162, 210, 542
BseNI ACTGG 3 cut(s) 122, 384, 487
BseYI CCCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 79, 490
Bsp143I GATC 2 cut(s) 187, 595
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 3 cut(s) 161, 209, 541
BspLI GGNNCC 3 cut(s) 382, 398, 489
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 3 cut(s) 122, 384, 487
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 187, 595
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 3 cut(s) 148, 196, 528
BstF5I GGATG 3 cut(s) 38, 53, 520
BstKTI GATC 2 cut(s) 190, 598
BstMBI GATC 2 cut(s) 187, 595
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 38, 53, 520
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 204, 207
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 396
CviAII CATG 2 cut(s) 61, 401
CviJI RGCY 6 cut(s) 5, 217, 292, 314, 488, 552
CviKI_1 RGCY 6 cut(s) 5, 217, 292, 314, 488, 552
DdeI CTNAG 3 cut(s) 148, 196, 528
DpnI GATC 2 cut(s) 189, 597
DpnII GATC 2 cut(s) 187, 595
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 490
FaeI CATG 2 cut(s) 64, 404
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 60, 400
FauI CCCGC 1 cut(s) 205
FokI GGATG 3 cut(s) 25, 40, 527
FriOI GRGCYC 1 cut(s) 490
FspBI CTAG 3 cut(s) 288, 366, 405
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 143
Hin1II CATG 2 cut(s) 64, 404
HinfI GANTC 3 cut(s) 146, 265, 504
HpaII CCGG 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 21, 512, 593
HpyCH4V TGCA 3 cut(s) 336, 362, 414
HpyF3I CTNAG 3 cut(s) 148, 196, 528
Hsp92II CATG 2 cut(s) 64, 404
Kzo9I GATC 2 cut(s) 187, 595
LmnI GCTCC 3 cut(s) 303, 493, 543
LweI GCATC 1 cut(s) 371
MaeI CTAG 3 cut(s) 288, 366, 405
MalI GATC 2 cut(s) 189, 597
MboI GATC 2 cut(s) 187, 595
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 79, 490
MluCI AATT 2 cut(s) 181, 579
MlyI GAGTC 2 cut(s) 140, 274
MmeI TCCRAC 2 cut(s) 81, 185
MnlI CCTC 2 cut(s) 205, 435
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 2 cut(s) 420, 582
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 143
NciI CCSGG 1 cut(s) 143
NdeII GATC 2 cut(s) 187, 595
NlaIII CATG 2 cut(s) 64, 404
NlaIV GGNNCC 3 cut(s) 382, 398, 489
PceI AGGCCT 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 504
PleI GAGTC 2 cut(s) 140, 273
PpsI GAGTC 2 cut(s) 140, 273
PspFI CCCAGC 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 382, 398, 489
PspPI GGNCC 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 2 cut(s) 420, 582
Sau3AI GATC 2 cut(s) 187, 595
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 2 cut(s) 140, 274
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 2 cut(s) 79, 490
SetI ASST 5 cut(s) 20, 111, 197, 420, 554
SfaNI GCATC 1 cut(s) 371
SinI GGWCC 1 cut(s) 396
Sse9I AATT 2 cut(s) 181, 579
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 1 cut(s) 212
SspMI CTAG 3 cut(s) 288, 366, 405
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 181, 579
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 2 cut(s) 420, 582
Tru9I TTAA 2 cut(s) 420, 582
TscAI CASTG 2 cut(s) 204, 214
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 2 cut(s) 204, 214
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 385
XspI CTAG 3 cut(s) 288, 366, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.