Rh3DG302000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001336
Physical Location & Seq
Forward (+)
31870781 .. 31881583
10803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG302000.1

Sequence Viewer

Length: 489 bp
ATGGCCGGCAAAGGTGGCCTTGATGCAAGTGACGTCGGAGTCGCGAGTTTGGCCGCTCTTACCAGAGGCGCTGGCTGGGCTGCTTGGAGTTTGGGCTACTCAAAAGCGCTGGTGTCGGGGCCGGAGGATTGGATACTCGGAGTTGCTGGTTTCACTATTAGGCGGACGTTGGTCCAATGGACGTGCTGGGTGCGGACGACGACAGTATTGGACGGCAGTCGAAAAGACTGGATGCCAAACAGGAATGGGGTGTCCATATCAAATCTGGCTAGGGCATTAGTGTTGTTTCCTTCACCGAAAGGTCAAGAAGGTCAAGCTCACCGTCCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGGTGCAGAAGCTGAGGAAGGAGTGAAAGAGAAGGCAGAGGGAGAGCATATTTCTGGATTAAACCCTGGATGTTTAGGTAGTTTTGGAGCTAAAAAGTACTATTGGAGAAACTTCAGAGAGGGCCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.51

Weight (kDa)

9.64

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AatII GACGTC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 343
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 54, 163, 193
AcoI YGGCCR 2 cut(s) 3, 51
AcuI CTGAAG 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 455
AfeI AGCGCT 1 cut(s) 108
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 2 cut(s) 421, 480
AluBI AGCT 3 cut(s) 317, 368, 446
AluI AGCT 3 cut(s) 317, 368, 446
AlwNI CAGNNNCTG 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 108
AoxI GGCC 5 cut(s) 3, 16, 51, 119, 478
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 71, 109
AspS9I GGNCC 3 cut(s) 119, 172, 478
AsuHPI GGTGA 2 cut(s) 285, 311
AvaII GGWCC 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 2 cut(s) 423, 482
BciVI GTATCC 1 cut(s) 126
BfaI CTAG 1 cut(s) 270
BfoI RGCGCY 2 cut(s) 72, 110
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 2 cut(s) 54, 81
BlsI GCNGC 2 cut(s) 55, 82
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 423, 482
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 119, 172, 478
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 423, 482
BmsI GCATC 2 cut(s) 13, 222
BoxI GACNNNNGTC 2 cut(s) 170, 216
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 233, 329
BseBI CCWGG 2 cut(s) 423, 482
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 237, 431
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 233, 329
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 2 cut(s) 75, 186
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 5 cut(s) 5, 18, 53, 121, 480
BsiSI CCGG 3 cut(s) 6, 122, 352
BsnI GGCC 5 cut(s) 5, 18, 53, 121, 480
Bsp68I TCGCGA 1 cut(s) 44
BspACI CCGC 3 cut(s) 54, 163, 193
BspANI GGCC 5 cut(s) 5, 18, 53, 121, 480
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 2 cut(s) 233, 329
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 421
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 423, 482
Bst4CI ACNGT 2 cut(s) 205, 323
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 7, 73
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 237, 431
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 2 cut(s) 72, 110
BstHHI GCGC 2 cut(s) 71, 109
BstMWI GCNNNNNNNGC 3 cut(s) 15, 50, 77
BstNI CCWGG 2 cut(s) 423, 482
BstPAI GACNNNNGTC 2 cut(s) 170, 216
BstSCI CCNGG 2 cut(s) 421, 480
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 5 cut(s) 5, 18, 53, 121, 480
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 237, 431
BtuMI TCGCGA 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 7, 73
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 2 cut(s) 71, 109
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 119, 172, 478
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 369
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 3, 51
EciI GGCGGA 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 172
Eco47III AGCGCT 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 421, 480
FaiI YATR 2 cut(s) 257, 405
FalI AAGNNNNNCTT 1 cut(s) 35
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 54, 81
FokI GGATG 2 cut(s) 244, 438
Fsp4HI GCNGC 2 cut(s) 54, 81
FspBI CTAG 1 cut(s) 270
GlaI GCGC 2 cut(s) 70, 108
GluI GCNGC 2 cut(s) 54, 81
GsaI CCCAGC 2 cut(s) 79, 190
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 2 cut(s) 72, 110
HaeIII GGCC 5 cut(s) 5, 18, 53, 121, 480
HapII CCGG 3 cut(s) 6, 122, 352
HhaI GCGC 2 cut(s) 71, 109
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 2 cut(s) 69, 107
HinP1I GCGC 2 cut(s) 69, 107
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 2 cut(s) 39, 348
HpaII CCGG 3 cut(s) 6, 122, 352
HphI GGTGA 2 cut(s) 285, 311
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 38, 140, 473
Hpy188III TCNNGA 3 cut(s) 43, 305, 411
Hpy8I GTNNAC 1 cut(s) 344
Hpy99I CGWCG 3 cut(s) 38, 202, 348
HpyAV CCTTC 4 cut(s) 300, 302, 368, 382
HpyCH4III ACNGT 2 cut(s) 205, 323
HpyCH4IV ACGT 3 cut(s) 33, 167, 182
HpyCH4V TGCA 2 cut(s) 26, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 50, 77
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 3 cut(s) 33, 167, 182
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 2 cut(s) 69, 107
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 13, 222
MaeI CTAG 1 cut(s) 270
MaeII ACGT 3 cut(s) 33, 167, 182
MaeIII GTNAC 1 cut(s) 29
MbiI CCGCTC 1 cut(s) 56
MlyI GAGTC 2 cut(s) 48, 342
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 6 cut(s) 59, 118, 336, 364, 388, 469
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 1 cut(s) 416
MspI CCGG 3 cut(s) 6, 122, 352
MspR9I CCNGG 2 cut(s) 423, 482
MvaI CCWGG 2 cut(s) 423, 482
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 15, 50, 77
NaeI GCCGGC 1 cut(s) 7
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 29
NruI TCGCGA 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 55, 82
PleI GAGTC 2 cut(s) 47, 342
PpsI GAGTC 2 cut(s) 47, 342
PshAI GACNNNNGTC 2 cut(s) 170, 216
Psp6I CCWGG 2 cut(s) 421, 480
PspFI CCCAGC 2 cut(s) 75, 186
PspGI CCWGG 2 cut(s) 421, 480
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 3 cut(s) 119, 172, 478
PstNI CAGNNNCTG 1 cut(s) 368
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SalI GTCGAC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 2 cut(s) 54, 81
Sau96I GGNCC 3 cut(s) 119, 172, 478
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 48, 342
ScrFI CCNGG 2 cut(s) 423, 482
SfaNI GCATC 2 cut(s) 13, 222
SinI GGWCC 1 cut(s) 172
SsiI CCGC 3 cut(s) 54, 163, 193
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 421, 480
TaaI ACNGT 2 cut(s) 205, 323
TaiI ACGT 3 cut(s) 36, 170, 185
TaqI TCGA 2 cut(s) 220, 343
TatI WGTACW 1 cut(s) 453
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 343
XspI CTAG 1 cut(s) 270
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.