Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

71248526 .. 71250146

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGACTATACTGATTATTGACTTGGCTATTTTTATTTTTGTGGTTTTTACTTTGCAGAACCTCCTAGGCTACATTTGGGAGGTGCGAACTCTTCCACAACAACTACTGCTTGAAGATTTGGATGCTGCAAAGTGCAAGCATCAGTACGAAGATATAGTTGTTGGGTTTTTTTTTGTTAAGGGATTGGAGTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

65

Amino Acids

7.53

Weight (kDa)

4.5

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	126
BlnI	CCTAGG	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	127
BmsI	GCATC	2 cut(s)	112, 148
BsaJI	CCNNGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	2 cut(s)	26, 69
CviKI_1	RGCY	2 cut(s)	26, 69
CviQI	GTAC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaiI	YATR	2 cut(s)	8, 155
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	55, 128, 135
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	2 cut(s)	112, 148
MaeI	CTAG	1 cut(s)	65
MboII	GAAGA	3 cut(s)	83, 125, 161
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	2 cut(s)	71, 73
MseI	TTAA	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	197
SetI	ASST	2 cut(s)	63, 84
SfaNI	GCATC	2 cut(s)	112, 148
SgeI	CNNG	4 cut(s)	34, 77, 122, 148
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.