RLG00000012676

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001336
Physical Location & Seq
Reverse (-)
21166032 .. 21166682
651 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012676

Sequence Viewer

Length: 546 bp
ATGGGCTTCTTCCAGGGAGGTCCCAGTCGCCTCCATATCCTTGTTTGTCTCGACAATCGTGCCTTGCGGCAGATCATTTTCTATCTCGGTGTGAGGGATGGTGGGCTGCGGTCTTCTTGGCAGTGGTTTTATTCAGCTTCAGGTCGAGACCTCGCCGTGGACGGCTCCTTGGTCGCAGCGGTGGCCATGGCCAGGTCTTTTTTGTTGGATTGTAGTGATCTTTGTGACGCCCGAGTTGATGGTGTGGCTGGCAATGGTGGCCTTGATGCAAGTGGCGCCAGAGTCGCGAGATTGGGCGCCGCTCTTACCGGAGGAGCTAGCTGGGTTGCTCGGAGTTTGTGCTGCTCAAAAGCCCTAGTGTCGCGGTCGGAATCATTGGATCAGATACTCGGAGCTGCTGGTTTCGCTGTTAGGAGGAAGTTGGTCCGGTGGCCGTGCTGGGTGTGGACAACAACAATGTTGGGCGGCGGTCGAAAAGACTGGATGCCAAATAGGAAAGGGGTCTCCAGATCAAATCTGGCTAGGGCATTGGGTTGCTGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.4

Weight (kDa)

10.09

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 275, 296
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 2 cut(s) 287, 364
AciI CCGC 7 cut(s) 67, 109, 179, 300, 364, 465, 468
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 3 cut(s) 183, 189, 431
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 3 cut(s) 228, 276, 297
AfiI CCNNNNNNNGG 2 cut(s) 157, 192
AjnI CCWGG 2 cut(s) 12, 191
AluBI AGCT 4 cut(s) 137, 317, 321, 395
AluI AGCT 4 cut(s) 137, 317, 321, 395
Alw26I GTCTC 3 cut(s) 53, 141, 508
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 5 cut(s) 183, 189, 259, 431, 540
ApeKI GCWGC 4 cut(s) 106, 176, 342, 395
AspLEI GCGC 2 cut(s) 278, 299
AspS9I GGNCC 3 cut(s) 20, 424, 540
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 20, 424
BalI TGGCCA 2 cut(s) 185, 191
BanI GGYRCC 2 cut(s) 275, 296
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 93, 188, 329, 382
BccI CCATC 2 cut(s) 92, 233
BceAI ACGGC 3 cut(s) 140, 178, 418
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 2 cut(s) 14, 193
BcoDI GTCTC 3 cut(s) 53, 141, 508
BfaI CTAG 4 cut(s) 318, 356, 522, 544
BfoI RGCGCY 2 cut(s) 279, 300
BisI GCNGC 7 cut(s) 68, 107, 177, 300, 343, 396, 466
BlsI GCNGC 7 cut(s) 69, 108, 178, 301, 344, 397, 467
Bme1390I CCNGG 2 cut(s) 14, 193
Bme18I GGWCC 2 cut(s) 20, 424
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 20, 424, 540
BmiI GGNNCC 4 cut(s) 22, 166, 277, 298
BmrFI CCNGG 2 cut(s) 14, 193
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 256, 474
BmtI GCTAGC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 490
BsaHI GRCGYC 3 cut(s) 228, 276, 297
BsaI GGTCTC 2 cut(s) 141, 508
BsaJI CCNNGG 4 cut(s) 13, 156, 168, 186
BsaWI WCCGGW 2 cut(s) 308, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 192
Bse1I ACTGG 2 cut(s) 24, 485
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 14, 193
BseDI CCNNGG 4 cut(s) 13, 156, 168, 186
BseGI GGATG 2 cut(s) 103, 489
BseLI CCNNNNNNNGG 2 cut(s) 157, 192
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 24, 485
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 4 cut(s) 93, 188, 329, 382
BseYI CCCAGC 3 cut(s) 321, 438, 537
Bsh1236I CGCG 2 cut(s) 287, 364
Bsh1285I CGRYCG 2 cut(s) 368, 472
BshFI GGCC 5 cut(s) 185, 191, 261, 433, 542
BshNI GGYRCC 2 cut(s) 275, 296
BsiEI CGRYCG 2 cut(s) 368, 472
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 309, 427
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 157, 192
BsmAI GTCTC 3 cut(s) 53, 141, 508
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 5 cut(s) 185, 191, 261, 433, 542
Bso31I GGTCTC 2 cut(s) 141, 508
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 4 cut(s) 72, 217, 379, 509
Bsp19I CCATGG 1 cut(s) 186
Bsp68I TCGCGA 1 cut(s) 287
BspACI CCGC 7 cut(s) 67, 109, 179, 300, 364, 465, 468
BspANI GGCC 5 cut(s) 185, 191, 261, 433, 542
BspFNI CGCG 2 cut(s) 287, 364
BspLI GGNNCC 4 cut(s) 22, 166, 277, 298
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 275, 296
BspTNI GGTCTC 2 cut(s) 141, 508
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 24, 485
BssECI CCNNGG 4 cut(s) 13, 156, 168, 186
BssMI GATC 4 cut(s) 72, 217, 379, 509
BssNI GRCGYC 3 cut(s) 228, 276, 297
BssT1I CCWWGG 2 cut(s) 168, 186
Bst2UI CCWGG 2 cut(s) 14, 193
BstACI GRCGYC 3 cut(s) 228, 276, 297
BstC8I GCNNGC 2 cut(s) 250, 319
BstDSI CCRYGG 2 cut(s) 156, 186
BstF5I GGATG 2 cut(s) 103, 489
BstFNI CGCG 2 cut(s) 287, 364
BstH2I RGCGCY 2 cut(s) 279, 300
BstHHI GCGC 2 cut(s) 278, 299
BstKTI GATC 4 cut(s) 75, 220, 382, 512
BstMAI GTCTC 3 cut(s) 53, 141, 508
BstMBI GATC 4 cut(s) 72, 217, 379, 509
BstMCI CGRYCG 2 cut(s) 368, 472
BstMWI GCNNNNNNNGC 5 cut(s) 182, 258, 275, 284, 404
BstNI CCWGG 2 cut(s) 14, 193
BstSCI CCNGG 2 cut(s) 12, 191
BstUI CGCG 2 cut(s) 287, 364
BstV1I GCAGC 4 cut(s) 93, 188, 329, 382
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 5 cut(s) 185, 191, 261, 433, 542
BtgI CCRYGG 2 cut(s) 156, 186
BtsCI GGATG 2 cut(s) 103, 489
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 250, 319
CfoI GCGC 2 cut(s) 278, 299
Cfr13I GGNCC 3 cut(s) 20, 424, 540
CseI GACGC 1 cut(s) 236
CviAII CATG 1 cut(s) 187
DinI GGCGCC 2 cut(s) 277, 298
DpnI GATC 4 cut(s) 74, 219, 381, 511
DpnII GATC 4 cut(s) 72, 217, 379, 509
EaeI YGGCCR 3 cut(s) 183, 189, 431
Eco130I CCWWGG 2 cut(s) 168, 186
Eco31I GGTCTC 2 cut(s) 141, 508
Eco47I GGWCC 2 cut(s) 20, 424
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 12, 191
EcoT14I CCWWGG 2 cut(s) 168, 186
EgeI GGCGCC 2 cut(s) 277, 298
EheI GGCGCC 2 cut(s) 277, 298
ErhI CCWWGG 2 cut(s) 168, 186
FaeI CATG 1 cut(s) 190
FaiI YATR 2 cut(s) 36, 188
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 7 cut(s) 68, 107, 177, 300, 343, 396, 466
FokI GGATG 2 cut(s) 110, 496
Fsp4HI GCNGC 7 cut(s) 68, 107, 177, 300, 343, 396, 466
FspBI CTAG 4 cut(s) 318, 356, 522, 544
GlaI GCGC 2 cut(s) 277, 298
GluI GCNGC 7 cut(s) 68, 107, 177, 300, 343, 396, 466
GsaI CCCAGC 3 cut(s) 325, 442, 541
GsuI CTGGAG 1 cut(s) 490
HaeII RGCGCY 2 cut(s) 279, 300
HaeIII GGCC 5 cut(s) 185, 191, 261, 433, 542
HapII CCGG 2 cut(s) 309, 427
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 278, 299
Hin1I GRCGYC 3 cut(s) 228, 276, 297
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 2 cut(s) 276, 297
HinP1I GCGC 2 cut(s) 276, 297
HinfI GANTC 2 cut(s) 282, 371
HpaII CCGG 2 cut(s) 309, 427
Hpy166II GTNNAC 2 cut(s) 160, 447
Hpy188I TCNGA 4 cut(s) 333, 370, 384, 392
Hpy188III TCNNGA 4 cut(s) 50, 146, 286, 507
Hpy8I GTNNAC 2 cut(s) 160, 447
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 258, 275, 284, 404
Hsp92I GRCGYC 3 cut(s) 228, 276, 297
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 2 cut(s) 276, 297
KasI GGCGCC 2 cut(s) 275, 296
Kzo9I GATC 4 cut(s) 72, 217, 379, 509
LmnI GCTCC 3 cut(s) 170, 314, 392
Lsp1109I GCAGC 4 cut(s) 93, 188, 329, 382
LweI GCATC 2 cut(s) 256, 474
MaeI CTAG 4 cut(s) 318, 356, 522, 544
MaeIII GTNAC 1 cut(s) 224
MalI GATC 4 cut(s) 74, 219, 381, 511
MbiI CCGCTC 1 cut(s) 302
MboI GATC 4 cut(s) 72, 217, 379, 509
MboII GAAGA 1 cut(s) 105
MlsI TGGCCA 2 cut(s) 185, 191
MluNI TGGCCA 2 cut(s) 185, 191
Mly113I GGCGCC 2 cut(s) 276, 297
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 2 cut(s) 186, 348
MnlI CCTC 6 cut(s) 11, 41, 87, 161, 305, 408
Mox20I TGGCCA 2 cut(s) 185, 191
MscI TGGCCA 2 cut(s) 185, 191
Msp20I TGGCCA 2 cut(s) 185, 191
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 309, 427
MspR9I CCNGG 2 cut(s) 14, 193
MvaI CCWGG 2 cut(s) 14, 193
MvnI CGCG 2 cut(s) 287, 364
MwoI GCNNNNNNNGC 5 cut(s) 182, 258, 275, 284, 404
NarI GGCGCC 2 cut(s) 276, 297
NcoI CCATGG 1 cut(s) 186
NdeII GATC 4 cut(s) 72, 217, 379, 509
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 4 cut(s) 22, 166, 277, 298
NmuCI GTSAC 1 cut(s) 224
NruI TCGCGA 1 cut(s) 287
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 7 cut(s) 69, 108, 178, 301, 344, 397, 467
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 2 cut(s) 279, 300
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 12, 191
PspFI CCCAGC 3 cut(s) 321, 438, 537
PspGI CCWGG 2 cut(s) 12, 191
PspN4I GGNNCC 4 cut(s) 22, 166, 277, 298
PspPI GGNCC 3 cut(s) 20, 424, 540
PspPPI RGGWCCY 1 cut(s) 20
RruI TCGCGA 1 cut(s) 287
SatI GCNGC 7 cut(s) 68, 107, 177, 300, 343, 396, 466
Sau3AI GATC 4 cut(s) 72, 217, 379, 509
Sau96I GGNCC 3 cut(s) 20, 424, 540
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 14, 193
SetI ASST 8 cut(s) 22, 139, 145, 153, 197, 319, 323, 397
SfaNI GCATC 2 cut(s) 256, 474
SfoI GGCGCC 2 cut(s) 277, 298
SinI GGWCC 2 cut(s) 20, 424
SsiI CCGC 7 cut(s) 67, 109, 179, 300, 364, 465, 468
SspDI GGCGCC 2 cut(s) 275, 296
SspMI CTAG 4 cut(s) 318, 356, 522, 544
StyD4I CCNGG 2 cut(s) 12, 191
StyI CCWWGG 2 cut(s) 168, 186
TaqI TCGA 3 cut(s) 51, 145, 472
TauI GCSGC 3 cut(s) 70, 302, 468
TfiI GAWTC 1 cut(s) 371
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 4 cut(s) 106, 176, 342, 395
Tsp45I GTSAC 1 cut(s) 224
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 20, 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XspI CTAG 4 cut(s) 318, 356, 522, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.