Rw1G014120

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001336
Physical Location & Seq
Forward (+)
31495111 .. 31498615
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014120.1

Sequence Viewer

Length: 534 bp
ATGTGCTGGACTGCATCAGAAGATATGGAACCGACTATGTCTGCTAGTCTCTCAGGTAGTTCAAGTACCTTCATAACCTCTGCCTTGAATCAGTTGAATGTAGAGCAGAGCTCACCTGCAAAAAACCAAACACCAAACTTAGGGTCAGGTTCAGGTGTAACATCTGAACCTGAATTAGCTGCATCTTTACCACCCAAACCAGGGCAGAAAAGAAAAACTGTCAATGCTAGTCCTCAATGGGATCATTTCACTAGGTGTAAGATCCCTGGAATTGAAGATATTGATCCTATTTGGTGTACATACAACTATTGTCAAGAGCGGGTCCGGTGTTGTACTAAGAAAAATGGTACAAGTTTCATGATATCCCACTCTAGGAAGTGTGCTAACTGTCCTCTATTTGAACCTGCTGACCCTAGGCAAAGTAAACTTAACAGAGTCAATGTTTCCGGAGCTATTGTGTATCACTCATTCAATCCAGGAAGATGTAATCAGAAATGTATTGAGTACATAATTAAGGATGAGCTTCTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

177

Amino Acids

19.6

Weight (kDa)

8.33

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
Acc36I ACCTGC 2 cut(s) 124, 412
AccBSI CCGCTC 1 cut(s) 319
AccIII TCCGGA 1 cut(s) 446
AciI CCGC 1 cut(s) 319
AclWI GGATC 3 cut(s) 249, 256, 278
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 5 cut(s) 67, 298, 334, 349, 506
AfiI CCNNNNNNNGG 4 cut(s) 140, 200, 201, 372
AgsI TTSAA 6 cut(s) 63, 88, 97, 275, 401, 472
AjnI CCWGG 3 cut(s) 199, 265, 475
AluBI AGCT 4 cut(s) 111, 179, 452, 523
AluI AGCT 4 cut(s) 111, 179, 452, 523
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 3 cut(s) 249, 256, 278
Aor13HI TCCGGA 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspA2I CCTAGG 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 322
AvrII CCTAGG 1 cut(s) 413
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 166
BciT130I CCWGG 3 cut(s) 201, 267, 477
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 5 cut(s) 45, 228, 252, 372, 414
BfuAI ACCTGC 2 cut(s) 124, 412
BisI GCNGC 1 cut(s) 180
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 3 cut(s) 201, 267, 477
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 30, 323
BmrFI CCNGG 3 cut(s) 201, 267, 477
BmsI GCATC 2 cut(s) 23, 191
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 200, 265, 413
BsaWI WCCGGW 2 cut(s) 324, 446
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 200, 201, 372
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 446
BseBI CCWGG 3 cut(s) 201, 267, 477
BseDI CCNNGG 3 cut(s) 200, 265, 413
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 4 cut(s) 140, 200, 201, 372
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 2 cut(s) 325, 447
BslI CCNNNNNNNGG 4 cut(s) 140, 200, 201, 372
BsmAI GTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 446
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 3 cut(s) 241, 261, 283
BspACI CCGC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 446
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 30, 323
BspMI ACCTGC 2 cut(s) 124, 412
BspPI GGATC 3 cut(s) 249, 256, 278
BsrBI CCGCTC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 200, 265, 413
BssMI GATC 3 cut(s) 241, 261, 283
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 3 cut(s) 201, 267, 477
Bst4CI ACNGT 2 cut(s) 220, 389
BstAUI TGTACA 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 52, 139, 336
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 3 cut(s) 244, 264, 286
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 241, 261, 283
BstNI CCWGG 3 cut(s) 201, 267, 477
BstSCI CCNGG 3 cut(s) 199, 265, 475
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtsCI GGATG 1 cut(s) 523
BveI ACCTGC 2 cut(s) 124, 412
CciI TCATGA 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 5 cut(s) 66, 297, 333, 348, 505
CviAII CATG 1 cut(s) 358
CviJI RGCY 4 cut(s) 111, 179, 452, 523
CviKI_1 RGCY 4 cut(s) 111, 179, 452, 523
CviQI GTAC 5 cut(s) 66, 297, 333, 348, 505
DdeI CTNAG 3 cut(s) 52, 139, 336
DpnI GATC 3 cut(s) 243, 263, 285
DpnII GATC 3 cut(s) 241, 261, 283
DraIII CACNNNGTG 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 199, 265, 475
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 1 cut(s) 361
FaiI YATR 6 cut(s) 26, 38, 74, 301, 359, 509
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 5 cut(s) 45, 228, 252, 372, 414
GluI GCNGC 1 cut(s) 180
HapII CCGG 2 cut(s) 325, 447
Hin1II CATG 1 cut(s) 361
HinfI GANTC 2 cut(s) 88, 435
HpaII CCGG 2 cut(s) 325, 447
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 297, 425
Hpy188I TCNGA 3 cut(s) 19, 166, 492
Hpy188III TCNNGA 3 cut(s) 314, 358, 447
Hpy8I GTNNAC 2 cut(s) 297, 425
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 220, 389
HpyCH4V TGCA 3 cut(s) 14, 119, 182
HpyF3I CTNAG 3 cut(s) 52, 139, 336
Hsp92II CATG 1 cut(s) 361
Kpn2I TCCGGA 1 cut(s) 446
Kzo9I GATC 3 cut(s) 241, 261, 283
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 2 cut(s) 23, 191
MaeI CTAG 5 cut(s) 45, 228, 252, 372, 414
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 243, 263, 285
MbiI CCGCTC 1 cut(s) 319
MboI GATC 3 cut(s) 241, 261, 283
MboII GAAGA 3 cut(s) 32, 287, 492
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 173, 270, 510
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 3 cut(s) 88, 243, 402
MroI TCCGGA 1 cut(s) 446
MseI TTAA 2 cut(s) 429, 513
MspI CCGG 2 cut(s) 325, 447
MspR9I CCNGG 3 cut(s) 201, 267, 477
MvaI CCWGG 3 cut(s) 201, 267, 477
NdeII GATC 3 cut(s) 241, 261, 283
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 30, 323
PagI TCATGA 1 cut(s) 357
PaqCI CACCTGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 88
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 199, 265, 475
PspGI CCWGG 3 cut(s) 199, 265, 475
PspN4I GGNNCC 2 cut(s) 30, 323
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 5 cut(s) 67, 298, 334, 349, 506
RsaNI GTAC 5 cut(s) 66, 297, 333, 348, 505
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 429, 513
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 241, 261, 283
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 3 cut(s) 201, 267, 477
SduI GDGCHC 1 cut(s) 113
SfaNI GCATC 2 cut(s) 23, 191
SinI GGWCC 1 cut(s) 322
Sse9I AATT 3 cut(s) 173, 270, 510
SsiI CCGC 1 cut(s) 319
SspMI CTAG 5 cut(s) 45, 228, 252, 372, 414
SstI GAGCTC 1 cut(s) 113
StyD4I CCNGG 3 cut(s) 199, 265, 475
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 2 cut(s) 220, 389
TasI AATT 3 cut(s) 173, 270, 510
TatI WGTACW 3 cut(s) 296, 332, 504
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 429, 513
Tru9I TTAA 2 cut(s) 429, 513
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 61, 346
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 322
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 5 cut(s) 45, 228, 252, 372, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.