Rh3CG170900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
14937584 .. 14938492
909 bp
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UTR
Exon/CDS
Intron
Rh3CG170900.1

Sequence Viewer

Length: 210 bp
ATGTTAAACTCCAAGGTCAAGAAGGTCAAGCTCACCGTCCTCCAGTTCTACAAGGTCGACGACTTCCGGCAAGGTGCAGAAGCTGAGGAAGGAGTGAAAGAGAAGGCAGAGGGTAGTTTTGGAGCTAAAAAGTACTATTGCAGATTTGCAGAAACTGCTGGACTTAGATTGGATGAACCAAGCTCTTCTACGACCACTGCTGCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.63

Weight (kDa)

8.76

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AfaI GTAC 1 cut(s) 134
AluBI AGCT 4 cut(s) 31, 83, 125, 183
AluI AGCT 4 cut(s) 31, 83, 125, 183
AlwNI CAGNNNCTG 2 cut(s) 83, 155
ApeKI GCWGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 25
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 84, 164
BstF5I GGATG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CaiI CAGNNNCTG 2 cut(s) 83, 155
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 4 cut(s) 31, 83, 125, 183
CviKI_1 RGCY 4 cut(s) 31, 83, 125, 183
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 84, 164
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 1 cut(s) 208
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 26
HapII CCGG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 16, 83, 97
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 77, 141, 149, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 84, 164
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 56, 80, 144
Lsp1109I GCAGC 1 cut(s) 187
MboII GAAGA 1 cut(s) 177
MnlI CCTC 3 cut(s) 50, 79, 103
MseI TTAA 1 cut(s) 5
MspI CCGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 202
PstNI CAGNNNCTG 2 cut(s) 83, 155
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SalI GTCGAC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 201
ScaI AGTACT 1 cut(s) 134
SetI ASST 8 cut(s) 18, 27, 33, 57, 76, 85, 127, 185
SgeI CNNG 9 cut(s) 25, 31, 40, 55, 64, 79, 83, 171, 192
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 57
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.