Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

12536003 .. 12536500

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAAGTATAACATATTTCCGAAGTTGCGGAGTTATGACCCAGCATTGTTTTGCTTTTGCGAGAAATCGGAGGCGGAGAAGGCGTATGAGGTGGACGAGCATATGGGTATGGTGGGGGTGAGCCTGGAGGAGCCGGAGATTGCGGCGTTATTGAAGGTGAGCGTGGAGACAGGAAATGGGGAGAGGGTTTATGGGTACTTGCATAAGTTGAGGAATGTCGCGAGGTGTGTTAGTGAATCAACGGCGAAGAACATTGAGGATTGGTTTTGTGGCGGAGCGGCTTGTGAGGTGGGTGAGGCGAATTGGGACTCGAGTTGGGTTAAAAAGTTGGTTTTGGGGAATGGAGGAGGGCGGCACGGGCAGGGGTGGATTGGGAAGGGCGGTTGGGATGTTAGGAGAGCCACTGTGGATTTGAGCAGCTGTCAATGTAGCTCTTGTGGCGAGCGTTTGGTTTGTGTTGACATTGATTGCGGGGAGACCGAGAGGTTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

166

Amino Acids

18.19

Weight (kDa)

5.05

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	1 - 96	7.9e-39	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	281
AccII	CGCG	1 cut(s)	224
AciI	CCGC	8 cut(s)	31, 77, 146, 276, 281, 355, 384, 474
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	423, 435
AluI	AGCT	2 cut(s)	423, 435
Alw26I	GTCTC	2 cut(s)	164, 473
Ama87I	CYCGRG	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	420
AsuHPI	GGTGA	3 cut(s)	133, 172, 308
AvaI	CYCGRG	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	164, 473
BisI	GCNGC	4 cut(s)	147, 282, 356, 421
BlsI	GCNGC	4 cut(s)	148, 283, 357, 422
Bme1390I	CCNGG	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	146, 363
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	164, 473
BsmFI	GGGAC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	313
Bsp68I	TCGCGA	1 cut(s)	224
BspACI	CCGC	8 cut(s)	31, 77, 146, 276, 281, 355, 384, 474
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	224
BstMAI	GTCTC	2 cut(s)	164, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 361, 441
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	405
BtuMI	TCGCGA	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	6 cut(s)	126, 136, 284, 404, 423, 435
CviKI_1	RGCY	6 cut(s)	126, 136, 284, 404, 423, 435
CviQI	GTAC	1 cut(s)	199
EciI	GGCGGA	2 cut(s)	92, 291
Eco31I	GGTCTC	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	9 cut(s)	12, 17, 39, 90, 105, 107, 113, 195, 207
FaqI	GGGAC	1 cut(s)	323
FauI	CCCGC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	147, 282, 356, 421
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	147, 282, 356, 421
GluI	GCNGC	4 cut(s)	147, 282, 356, 421
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	239, 311
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	133, 172, 308
Hpy166II	GTNNAC	2 cut(s)	97, 463
Hpy188I	TCNGA	2 cut(s)	24, 73
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	97, 463
HpyAV	CCTTC	3 cut(s)	76, 151, 373
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 361, 441
LmnI	GCTCC	2 cut(s)	133, 278
LpnPI	CCDG	6 cut(s)	57, 113, 140, 150, 159, 350
Lsp1109I	GCAGC	1 cut(s)	432
MbiI	CCGCTC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	305
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	83, 361, 441
NdeI	CATATG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	135
NruI	TCGCGA	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	148, 283, 357, 422
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	423
RruI	TCGCGA	1 cut(s)	224
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	147, 282, 356, 421
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	7 cut(s)	96, 162, 230, 294, 425, 437, 491
Sfr274I	CTCGAG	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	8 cut(s)	31, 77, 146, 276, 281, 355, 384, 474
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	314
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	1 cut(s)	304
TauI	GCSGC	3 cut(s)	149, 284, 358
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	1 cut(s)	420
TspRI	CASTG	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.