Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

57065048 .. 57066856

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019816

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGGTTCATAAACAGGGTGTAAACAATCTCTGGAAGCAAAGAATTCTTCTTATGTCTGATCTACCAAGAGAGCAGATGCGCAAGAAGGCTGACGATATTGCCAAAGATTTTAACCATATTGATATCCTTACAAAAAGCCTCAGCTTTACATACCCTTCTCATATCGCTACGCAGCATCAATTTTTCTCCCTCATCACAGACGCCGCACGTAGCTTCTCATCAGGATTTCGGGTTGGAAACCGAAGCCTCAATCAAGCAAGGCTCTTTGGCAATTTGATTCAGGTCCTGAAAGTACGAGTGCTAGAAGTTGGAAGTTCAGTCCTTTTGCGGGTGGAAATTCCTGAAGTCGCTGACACATTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

123

Amino Acids

13.94

Weight (kDa)

9.77

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	83
AciI	CCGC	2 cut(s)	207, 331
AcsI	RAATTY	2 cut(s)	45, 339
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	331
AluBI	AGCT	2 cut(s)	147, 216
AluI	AGCT	2 cut(s)	147, 216
AlwNI	CAGNNNCTG	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	45, 339
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	176, 207
BlsI	GCNGC	2 cut(s)	177, 208
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmsI	GCATC	2 cut(s)	69, 187
Bpu10I	CCTNAGC	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	207, 331
BspCNI	CTCAG	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	359
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	296
CviJI	RGCY	6 cut(s)	92, 141, 147, 216, 249, 265
CviKI_1	RGCY	6 cut(s)	92, 141, 147, 216, 249, 265
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	127
FaiI	YATR	5 cut(s)	12, 56, 120, 154, 165
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	176, 207
Fsp4HI	GCNGC	2 cut(s)	176, 207
FspBI	CTAG	1 cut(s)	305
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	176, 207
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	34, 225, 289, 344
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	82, 168
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	6 cut(s)	2, 19, 210, 269, 302, 357
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	69, 187
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	41
MluCI	AATT	4 cut(s)	45, 182, 274, 339
MmeI	TCCRAC	2 cut(s)	217, 292
MnlI	CCTC	3 cut(s)	152, 203, 260
MseI	TTAA	1 cut(s)	114
NdeII	GATC	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	177, 208
Ppu21I	YACGTR	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	176, 207
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	5 cut(s)	9, 149, 214, 218, 288
SfaNI	GCATC	2 cut(s)	69, 187
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	4 cut(s)	45, 182, 274, 339
SsiI	CCGC	2 cut(s)	207, 331
SspMI	CTAG	1 cut(s)	305
TaiI	ACGT	1 cut(s)	214
TasI	AATT	4 cut(s)	45, 182, 274, 339
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	45, 339
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.