Rh7BG399400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001336
Physical Location & Seq
Reverse (-)
44293879 .. 44294669
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG399400.1

Sequence Viewer

Length: 294 bp
ATGTTGTTGTTCAATTTTTATTGTCGATTACTCGATTTTGATCAAAAGAAACTCCAAGGTCAAGAAGGTCAAGCTCACCGTCCTCCAGTTCTACAAGGTCGACGACTCCGGCAAGGTGCAGAAGCTGAGGAAGGAGTGAAAGAGAAGGCAGAGGGAGATCATTTTTCTGGATTAAACTCTGAATGTTTAGAAACTTCACAGAGGGCCAGGAATAGAGAAGGACAAAGTTGGTTGGAGCTTACGTTTAGGAGCATACGTTGGAGTGTTTATTTAAAAGATGGCATCTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.35

Weight (kDa)

7.81

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 100
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 74, 125, 238
AluI AGCT 3 cut(s) 74, 125, 238
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 40
BfaI CTAG 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 4 cut(s) 227, 241, 257, 271
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 40, 157
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 40, 157
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 2 cut(s) 43, 160
BstMBI GATC 2 cut(s) 40, 157
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 206
CaiI CAGNNNCTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 204
CviJI RGCY 4 cut(s) 74, 125, 206, 238
CviKI_1 RGCY 4 cut(s) 74, 125, 206, 238
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 42, 159
DpnII GATC 2 cut(s) 40, 157
DraI TTTAAA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaiI YATR 1 cut(s) 254
FbaI TGATCA 1 cut(s) 40
FblI GTMKAC 1 cut(s) 100
FspBI CTAG 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 109
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 62, 168
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 4 cut(s) 59, 125, 139, 212
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 2 cut(s) 242, 256
HpyCH4V TGCA 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 242, 256
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 157
LmnI GCTCC 2 cut(s) 235, 249
LpnPI CCDG 5 cut(s) 99, 122, 153, 193, 220
MaeI CTAG 1 cut(s) 292
MaeII ACGT 2 cut(s) 242, 256
MalI GATC 2 cut(s) 42, 159
MboI GATC 2 cut(s) 40, 157
MboII GAAGA 2 cut(s) 277, 280
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 213, 239
MnlI CCTC 4 cut(s) 93, 121, 145, 195
MseI TTAA 2 cut(s) 173, 272
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
NdeII GATC 2 cut(s) 40, 157
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 125
SalI GTCGAC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 173, 272
Sau3AI GATC 2 cut(s) 40, 157
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 208
SetI ASST 9 cut(s) 61, 70, 76, 100, 118, 127, 240, 245, 259
Sse9I AATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 2 cut(s) 245, 259
TaqI TCGA 3 cut(s) 25, 33, 100
TasI AATT 1 cut(s) 13
Tru1I TTAA 2 cut(s) 173, 272
Tru9I TTAA 2 cut(s) 173, 272
XmiI GTMKAC 1 cut(s) 100
XspI CTAG 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.