Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000344.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1739

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000344.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgcatatagagtctactgcagctttaggtcagtcccctttagggccacccactcaaacacgcccaccttcagctgtaggttcaggttctggtgttgaatctgaacctggcagtgacaacatacaaccccctgctgtaattgggcagaaaagaaaagaacctgctaacaaaagtcctctttgggcacattttactagatgtaaactcccgaactcagaccaaatagatacatgttggtgcacttgtaacaattgtaatgagaaagtcttgtgtgatagtaaaaagaatgggacaagctcaaagcaaacgtttggagcaagagctatgggtacacaaagtggaaatctgagtcaaaccagtagctcaagcccttctattagttctgccatgcatatagagtctactgcagctttagggcagtcccctttaggaccacccactcaaacattcccaccttcagttttaggttcaggttctggttctgaatctgaacctggcagtcacaacatacaaccccctgctgtaattgggcagaaaagaaaagaacctgctaacaaaagtcctctttgggcacattttactagatgtaaactcccaaacttagaccaaatagatacatgttggtgcacttgtaactattgtaatgagaaagtcttgtgtgatagtaaaaagaatgggacaagctcaatgtggtcacatactaggaaatgtggcactcatccattaaacggagaatctgatcccaagcaggctaagttgaataaggataatgtgagtggagctccaacataccataagtataaccggaaaaggtgtgatgataggtgcatatatatgattatcaaggatgaacttccttttaggcatgtagagaaagaaggatttcaagctttctgtaaagaattggagccatcttggccaggaatgaacagaaagcaggttgctaagggtgtcatagatagcgaaggtagcaaccaaactgaacaaagcatggcagaagattttggattggatggggatgacttggagaaccttgatgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

347

Amino Acids

37.66

Weight (kDa)

6.75

Isoelectric Point (pI)

67.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	169, 556, 928
AccI	GTMKAC	2 cut(s)	14, 401
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	917
AcuI	CTGAAG	2 cut(s)	54, 441
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	42, 728
AflIII	ACRYGT	2 cut(s)	230, 617
AgsI	TTSAA	3 cut(s)	98, 760, 887
AjnI	CCWGG	3 cut(s)	106, 493, 919
AluBI	AGCT	9 cut(s)	23, 74, 297, 323, 363, 410, 684, 782, 890
AluI	AGCT	9 cut(s)	23, 74, 297, 323, 363, 410, 684, 782, 890
Alw21I	GWGCWC	3 cut(s)	242, 629, 784
Alw44I	GTGCAC	2 cut(s)	238, 625
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	2 cut(s)	89, 476
AoxI	GGCC	2 cut(s)	44, 917
ApaLI	GTGCAC	2 cut(s)	238, 625
ApeKI	GCWGC	2 cut(s)	20, 407
Asp700I	GAANNNNTTC	1 cut(s)	882
AspS9I	GGNCC	2 cut(s)	44, 431
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	4 cut(s)	187, 242, 574, 629
BalI	TGGCCA	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	784
Bbv12I	GWGCWC	3 cut(s)	242, 629, 784
BbvI	GCAGC	2 cut(s)	32, 419
BccI	CCATC	2 cut(s)	919, 1007
BciT130I	CCWGG	3 cut(s)	108, 495, 921
BfaI	CTAG	3 cut(s)	195, 582, 702
BfmI	CTRYAG	3 cut(s)	18, 75, 405
BfuAI	ACCTGC	3 cut(s)	169, 556, 928
BglI	GCCNNNNNGGC	1 cut(s)	916
BisI	GCNGC	2 cut(s)	21, 408
BlsI	GCNGC	2 cut(s)	22, 409
Bme1390I	CCNGG	3 cut(s)	108, 495, 921
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	44, 431
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	3 cut(s)	108, 495, 921
BplI	GAGNNNNNCTC	2 cut(s)	766, 798
Bpu10I	CCTNAGC	1 cut(s)	945
BpuEI	CTTGAG	1 cut(s)	349
BsaWI	WCCGGW	1 cut(s)	804
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 728
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	108, 495, 921
BseGI	GGATG	4 cut(s)	718, 853, 1018, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	42, 728
BseMII	CTCAG	2 cut(s)	228, 338
BseNI	ACTGG	1 cut(s)	357
BseSI	GKGCMC	4 cut(s)	187, 242, 574, 629
BseXI	GCAGC	2 cut(s)	32, 419
BshFI	GGCC	2 cut(s)	46, 919
BsiHKAI	GWGCWC	3 cut(s)	242, 629, 784
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	4 cut(s)	19, 304, 406, 691
BslI	CCNNNNNNNGG	2 cut(s)	42, 728
BsmFI	GGGAC	4 cut(s)	19, 304, 406, 691
BsnI	GGCC	2 cut(s)	46, 919
Bsp1286I	GDGCHC	5 cut(s)	187, 242, 574, 629, 784
Bsp143I	GATC	1 cut(s)	739
BspANI	GGCC	2 cut(s)	46, 919
BspCNI	CTCAG	2 cut(s)	227, 339
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	2 cut(s)	22, 409
BspMI	ACCTGC	3 cut(s)	169, 556, 928
BspPI	GGATC	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	739
Bst2UI	CCWGG	3 cut(s)	108, 495, 921
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	5 cut(s)	214, 347, 601, 753, 945
BstF5I	GGATG	4 cut(s)	718, 853, 1018, 1024
BstKTI	GATC	1 cut(s)	742
BstMBI	GATC	1 cut(s)	739
BstMWI	GCNNNNNNNGC	2 cut(s)	916, 969
BstNI	CCWGG	3 cut(s)	108, 495, 921
BstNSI	RCATGY	3 cut(s)	234, 621, 869
BstSCI	CCNGG	3 cut(s)	106, 493, 919
BstSFI	CTRYAG	3 cut(s)	18, 75, 405
BstSLI	GKGCMC	4 cut(s)	187, 242, 574, 629
BstV1I	GCAGC	2 cut(s)	32, 419
BsuRI	GGCC	2 cut(s)	46, 919
BtsCI	GGATG	4 cut(s)	718, 853, 1018, 1024
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
BveI	ACCTGC	3 cut(s)	169, 556, 928
Cac8I	GCNNGC	1 cut(s)	750
CaiI	CAGNNNCTG	2 cut(s)	89, 476
Cfr13I	GGNCC	2 cut(s)	44, 431
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	5 cut(s)	231, 388, 618, 866, 991
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	5 cut(s)	214, 347, 601, 753, 945
DpnI	GATC	1 cut(s)	741
DpnII	GATC	1 cut(s)	739
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	917
Ecl136II	GAGCTC	1 cut(s)	782
Eco24I	GRGCYC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	782
Eco57I	CTGAAG	2 cut(s)	54, 441
EcoICRI	GAGCTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	106, 493, 919
EcoT22I	ATGCAT	2 cut(s)	6, 393
EcoT38I	GRGCYC	1 cut(s)	784
FaeI	CATG	5 cut(s)	234, 391, 621, 869, 994
FaqI	GGGAC	4 cut(s)	19, 304, 406, 691
FatI	CATG	5 cut(s)	230, 387, 617, 865, 990
FblI	GTMKAC	2 cut(s)	14, 401
Fnu4HI	GCNGC	2 cut(s)	21, 408
FokI	GGATG	4 cut(s)	705, 860, 1025, 1031
FriOI	GRGCYC	1 cut(s)	784
Fsp4HI	GCNGC	2 cut(s)	21, 408
FspBI	CTAG	3 cut(s)	195, 582, 702
GluI	GCNGC	2 cut(s)	21, 408
HaeIII	GGCC	2 cut(s)	46, 919
HapII	CCGG	1 cut(s)	805
Hin1II	CATG	5 cut(s)	234, 391, 621, 869, 994
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	6 cut(s)	11, 98, 349, 398, 485, 734
HpaII	CCGG	1 cut(s)	805
Hpy166II	GTNNAC	7 cut(s)	15, 203, 240, 332, 402, 590, 627
Hpy188I	TCNGA	6 cut(s)	103, 217, 348, 484, 490, 739
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	7 cut(s)	15, 203, 240, 332, 402, 590, 627
HpyAV	CCTTC	5 cut(s)	78, 381, 465, 872, 959
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	7 cut(s)	4, 20, 240, 391, 407, 627, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	916, 969
HpyF3I	CTNAG	5 cut(s)	214, 347, 601, 753, 945
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	234, 391, 621, 869, 994
Kzo9I	GATC	1 cut(s)	739
LmnI	GCTCC	4 cut(s)	314, 779, 787, 907
Lsp1109I	GCAGC	2 cut(s)	32, 419
MaeI	CTAG	3 cut(s)	195, 582, 702
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	5 cut(s)	113, 245, 500, 632, 693
MalI	GATC	1 cut(s)	741
MboI	GATC	1 cut(s)	739
MboII	GAAGA	1 cut(s)	1010
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	5 cut(s)	187, 242, 574, 629, 784
MlsI	TGGCCA	1 cut(s)	919
MluCI	AATT	4 cut(s)	138, 250, 525, 902
MluNI	TGGCCA	1 cut(s)	919
MlyI	GAGTC	3 cut(s)	20, 358, 407
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	2 cut(s)	186, 573
Mox20I	TGGCCA	1 cut(s)	919
Mph1103I	ATGCAT	2 cut(s)	6, 393
MroXI	GAANNNNTTC	1 cut(s)	882
MscI	TGGCCA	1 cut(s)	919
MseI	TTAA	1 cut(s)	725
MslI	CAYNNNNRTG	3 cut(s)	235, 622, 833
Msp20I	TGGCCA	1 cut(s)	919
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	3 cut(s)	108, 495, 921
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	3 cut(s)	108, 495, 921
MwoI	GCNNNNNNNGC	2 cut(s)	916, 969
NdeII	GATC	1 cut(s)	739
NlaIII	CATG	5 cut(s)	234, 391, 621, 869, 994
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	3 cut(s)	113, 500, 693
NsiI	ATGCAT	2 cut(s)	6, 393
NspI	RCATGY	3 cut(s)	234, 621, 869
PciI	ACATGT	2 cut(s)	230, 617
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	3 cut(s)	98, 485, 734
PkrI	GCNGC	2 cut(s)	22, 409
PleI	GAGTC	3 cut(s)	19, 357, 406
PpsI	GAGTC	3 cut(s)	19, 357, 406
PscI	ACATGT	2 cut(s)	230, 617
Psp124BI	GAGCTC	1 cut(s)	784
Psp1406I	AACGTT	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	106, 493, 919
PspGI	CCWGG	3 cut(s)	106, 493, 919
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	2 cut(s)	44, 431
PstI	CTGCAG	2 cut(s)	22, 409
PstNI	CAGNNNCTG	2 cut(s)	89, 476
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	3 cut(s)	235, 622, 833
SacI	GAGCTC	1 cut(s)	784
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	2 cut(s)	21, 408
Sau3AI	GATC	1 cut(s)	739
Sau96I	GGNCC	2 cut(s)	44, 431
SchI	GAGTC	3 cut(s)	20, 358, 407
ScrFI	CCNGG	3 cut(s)	108, 495, 921
SduI	GDGCHC	5 cut(s)	187, 242, 574, 629, 784
SfcI	CTRYAG	3 cut(s)	18, 75, 405
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	3 cut(s)	235, 622, 833
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	4 cut(s)	138, 250, 525, 902
SspMI	CTAG	3 cut(s)	195, 582, 702
SstI	GAGCTC	1 cut(s)	784
StyD4I	CCNGG	3 cut(s)	106, 493, 919
TaiI	ACGT	1 cut(s)	311
TasI	AATT	4 cut(s)	138, 250, 525, 902
TfiI	GAWTC	3 cut(s)	98, 485, 734
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	3 cut(s)	113, 500, 693
TseI	GCWGC	2 cut(s)	20, 407
Tsp45I	GTSAC	3 cut(s)	113, 500, 693
TspDTI	ATGAA	2 cut(s)	864, 941
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	1 cut(s)	118
VneI	GTGCAC	2 cut(s)	238, 625
VpaK11BI	GGWCC	1 cut(s)	431
XceI	RCATGY	3 cut(s)	234, 621, 869
XmiI	GTMKAC	2 cut(s)	14, 401
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	3 cut(s)	195, 582, 702
Zsp2I	ATGCAT	2 cut(s)	6, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.