Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

38971181 .. 38971957

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0324900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGCTTTTCTGACTTGTATGAAGACGTTTTCCGTACGTTCCAGTTTTTGCCAAGTGATGTTATTGAGCTTCAATATTCAGTACCGGGTTGTGAAGTATGTTTTCTTCGTTCCGATCGTGATTTCCAGATGCTGTTCTGCGGTGCTAGAATATATAAATTAGAATGTGTTGAGATTTCTGTTTTAAAGATTGGTGGAACTTGCAGCAACACGTGTTCGGTGGATAGTCGTTCGGAAGTTGTGGATGAGGACGATTATTTGGGGGAGGCATTTAGGATTGAAGTTCACAAGTCGTATTTGTCTGATGAGTGGAGTTCCTATATTCATCATGTTGGAGAGAAGTTTCATGGTGCAGCTGAGCTCCGTGAGAAACTCAGGAAGTATTCAATTGCACTTGGTTTCGAGTTTGTGTTTTTGAGAAACGATTTAGACTGTATTCATGCAGTTTGTTCAAATGTTGGAACCGAAGGCTGTGATTGGCATCTTCGCGCTCTTTCATCATCTCAGAATGGTTGCCTTTATATAACGGAGTTGAATAATATTCACACTTGTAAGGGTGTAGTTAGGACTCAAAAGCACAGGCTTCTGGGATCCAAGGTTGTCAAGACTTGCATTGCTGCCGATGTTAGCTATAATCTTTCATTGAAGCCAAGGGAAATTATGAGTAAATTCAAGTCAACATATGGTTTTGATATTTCCTACAAGGTTGCCTTGAAAGCGAAGCAAAAGGCTAAGGAAGTGATTTATGGTTCGGTTGTAGATTCATTCAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.3

Weight (kDa)

6.45

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	110 - 171	3.7e-08	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	489
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	585, 598
AcsI	RAATTY	1 cut(s)	668
AcvI	CACGTG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	37, 84
AflIII	ACRYGT	2 cut(s)	210, 212
AgsI	TTSAA	8 cut(s)	74, 281, 387, 453, 535, 646, 673, 715
AluBI	AGCT	5 cut(s)	6, 70, 356, 361, 630
AluI	AGCT	5 cut(s)	6, 70, 356, 361, 630
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	585, 598
AlwNI	CAGNNNCTG	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	204, 353, 617
ApoI	RAATTY	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	491
AsuC2I	CCSGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BbrPI	CACGTG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	216, 365, 604
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	3 cut(s)	205, 354, 618
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	3 cut(s)	206, 355, 619
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	463, 592
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	120, 490
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	594, 650
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	594, 650
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	3 cut(s)	348, 388, 518
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	216, 365, 604
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	86
BsiWI	CGTACG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	115, 590
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	349, 387, 517
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	463, 592
BspPI	GGATC	2 cut(s)	585, 598
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	594, 650
BssMI	GATC	2 cut(s)	115, 590
BssT1I	CCWWGG	2 cut(s)	594, 650
Bst4CI	ACNGT	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	357, 374, 504, 732
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	2 cut(s)	118, 593
BstMBI	GATC	2 cut(s)	115, 590
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	216, 365, 604
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	36, 83
CviAII	CATG	3 cut(s)	329, 347, 440
CviJI	RGCY	9 cut(s)	6, 70, 356, 361, 471, 583, 630, 649, 731
CviKI_1	RGCY	9 cut(s)	6, 70, 356, 361, 471, 583, 630, 649, 731
CviQI	GTAC	2 cut(s)	36, 83
DdeI	CTNAG	4 cut(s)	357, 374, 504, 732
DpnI	GATC	2 cut(s)	117, 592
DpnII	GATC	2 cut(s)	115, 590
DraI	TTTAAA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	594, 650
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	594, 650
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	594, 650
FaeI	CATG	3 cut(s)	332, 350, 443
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FatI	CATG	3 cut(s)	328, 346, 439
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	3 cut(s)	205, 354, 618
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	205, 354, 618
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	3 cut(s)	205, 354, 618
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	332, 350, 443
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HinfI	GANTC	2 cut(s)	568, 761
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	286, 678
Hpy188I	TCNGA	5 cut(s)	13, 115, 235, 304, 507
Hpy188III	TCNNGA	4 cut(s)	119, 127, 376, 604
Hpy8I	GTNNAC	2 cut(s)	286, 678
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	3 cut(s)	27, 38, 212
HpyCH4V	TGCA	5 cut(s)	204, 353, 392, 443, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	4 cut(s)	357, 374, 504, 732
HpySE526I	ACGT	3 cut(s)	27, 38, 212
Hsp92II	CATG	3 cut(s)	332, 350, 443
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	115, 590
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	6 cut(s)	56, 99, 140, 361, 565, 572
Lsp1109I	GCAGC	3 cut(s)	216, 365, 604
LweI	GCATC	2 cut(s)	120, 490
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	27, 38, 212
MalI	GATC	2 cut(s)	117, 592
MboI	GATC	2 cut(s)	115, 590
MboII	GAAGA	3 cut(s)	35, 98, 476
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	4 cut(s)	158, 387, 657, 668
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	313, 439
MnlI	CCTC	2 cut(s)	241, 259
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	2 cut(s)	115, 590
NlaIII	CATG	3 cut(s)	332, 350, 443
NlaIV	GGNNCC	2 cut(s)	463, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	761
Pfl23II	CGTACG	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	206, 355, 619
Ple19I	CGATCG	1 cut(s)	118
PleI	GAGTC	1 cut(s)	562
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	562
Ppu21I	YACGTR	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	213
PspLI	CGTACG	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	463, 592
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	590
PvuI	CGATCG	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	37, 84
RsaNI	GTAC	2 cut(s)	36, 83
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	3 cut(s)	205, 354, 618
Sau3AI	GATC	2 cut(s)	115, 590
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	120, 490
Sse9I	AATT	4 cut(s)	158, 387, 657, 668
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	2 cut(s)	77, 541
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	594, 650
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	3 cut(s)	30, 41, 215
TaqI	TCGA	1 cut(s)	402
TasI	AATT	4 cut(s)	158, 387, 657, 668
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseI	GCWGC	3 cut(s)	204, 353, 617
TspDTI	ATGAA	7 cut(s)	36, 314, 335, 428, 486, 630, 753
TspGWI	ACGGA	3 cut(s)	23, 353, 542
XapI	RAATTY	1 cut(s)	668
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.