Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

35314852 .. 35319214

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAACCCTTCCCCCTTGCGACCCGCGGACCCGACCCTACCGGAAACGCCACTTCCGGTCGCCACCCCATTGGACCCGCGCCGGACGGGTGCGCCTCGGCGAGCCCGGCCACTCGTGGCCTCGCTCCGCCCGCTGCGCCTCCAAGTCGAGATAGGAGGTCGACCCGAGTGCAAAAGGATCCGCCGGAAATCCAATTTTCCAACGTTCCGTCGATCGATCGTTGGCATTTTCGTGATCTCCTCATCTTGCCGATCATCCTCATATCCTCCATGCTTGACGTTTTGGAGTGTAGAGCGAAACTGCTACACTGCAATTGGGAGGTGCAAACTCGTCTACGACAACTACTGCTTGAAGATTTGGATGGTGGAAACATCCAATTCGAAGATATAGCTGTTGCCCATTCATCCACTTCGGTTGGGCCTGAACCGAAACTAAACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

7.8

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	161, 334
AccII	CGCG	2 cut(s)	27, 80
AciI	CCGC	6 cut(s)	25, 27, 78, 128, 132, 182
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	2 cut(s)	173, 186
AcoI	YGGCCR	1 cut(s)	108
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	1 cut(s)	353
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
AlwI	GGATC	2 cut(s)	173, 186
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	3 cut(s)	108, 118, 419
ApeKI	GCWGC	1 cut(s)	134
AsiGI	ACCGGT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	82, 95, 139
AspS9I	GGNCC	3 cut(s)	29, 74, 419
AsuC2I	CCSGG	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	2 cut(s)	29, 74
BamHI	GGATCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	29, 74
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	29, 74, 419
BmiI	GGNNCC	3 cut(s)	31, 76, 180
BmrFI	CCNGG	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	25, 96
BsaWI	WCCGGW	3 cut(s)	41, 56, 438
Bse118I	RCCGGY	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	25, 96
BseGI	GGATG	4 cut(s)	255, 367, 372, 404
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	27, 80
Bsh1285I	CGRYCG	3 cut(s)	61, 216, 220
BshFI	GGCC	3 cut(s)	110, 120, 421
BshTI	ACCGGT	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	216
BsiEI	CGRYCG	3 cut(s)	61, 216, 220
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	6 cut(s)	42, 57, 83, 107, 185, 439
BsnI	GGCC	3 cut(s)	110, 120, 421
BsoBI	CYCGRG	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	5 cut(s)	178, 213, 217, 235, 252
BspACI	CCGC	6 cut(s)	25, 27, 78, 128, 132, 182
BspANI	GGCC	3 cut(s)	110, 120, 421
BspDI	ATCGAT	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	27, 80
BspLI	GGNNCC	3 cut(s)	31, 76, 180
BspPI	GGATC	2 cut(s)	173, 186
BspT104I	TTCGAA	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	25, 96
BssMI	GATC	5 cut(s)	178, 213, 217, 235, 252
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	103, 132
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	4 cut(s)	255, 367, 372, 404
BstFNI	CGCG	2 cut(s)	27, 80
BstHHI	GCGC	3 cut(s)	82, 95, 139
BstKTI	GATC	5 cut(s)	181, 216, 220, 238, 255
BstMBI	GATC	5 cut(s)	178, 213, 217, 235, 252
BstMCI	CGRYCG	3 cut(s)	61, 216, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 131, 136
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	27, 80
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	110, 120, 421
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	255, 367, 372, 404
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	103, 132
CfoI	GCGC	3 cut(s)	82, 95, 139
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	29, 74, 419
Cfr42I	CCGCGG	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	216
CspAI	ACCGGT	1 cut(s)	438
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	5 cut(s)	105, 110, 120, 392, 421
CviKI_1	RGCY	5 cut(s)	105, 110, 120, 392, 421
DpnI	GATC	5 cut(s)	180, 215, 219, 237, 254
DpnII	GATC	5 cut(s)	178, 213, 217, 235, 252
EaeI	YGGCCR	1 cut(s)	108
EciI	GGCGGA	2 cut(s)	117, 171
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	29, 74
Eco88I	CYCGRG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	263, 272, 389
FatI	CATG	1 cut(s)	270
FauI	CCCGC	3 cut(s)	32, 85, 139
FblI	GTMKAC	2 cut(s)	161, 334
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	4 cut(s)	242, 359, 374, 391
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	3 cut(s)	81, 94, 138
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	110, 120, 421
HapII	CCGG	6 cut(s)	42, 57, 83, 107, 185, 439
HhaI	GCGC	3 cut(s)	82, 95, 139
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	3 cut(s)	80, 93, 137
HinP1I	GCGC	3 cut(s)	80, 93, 137
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HpaII	CCGG	6 cut(s)	42, 57, 83, 107, 185, 439
Hpy166II	GTNNAC	2 cut(s)	162, 335
Hpy188III	TCNNGA	2 cut(s)	149, 233
Hpy8I	GTNNAC	2 cut(s)	162, 335
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	204, 279
HpyCH4V	TGCA	3 cut(s)	172, 312, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 131, 136
HpySE526I	ACGT	2 cut(s)	204, 279
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	3 cut(s)	80, 93, 137
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	178, 213, 217, 235, 252
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	55, 70, 96, 120, 198, 435
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	204, 279
MalI	GATC	5 cut(s)	180, 215, 219, 237, 254
MboI	GATC	5 cut(s)	178, 213, 217, 235, 252
MboII	GAAGA	2 cut(s)	365, 395
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	194, 313, 377
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	8 cut(s)	106, 131, 150, 150, 251, 269, 277, 313
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	2 cut(s)	27, 134
MspI	CCGG	6 cut(s)	42, 57, 83, 107, 185, 439
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	313
MvnI	CGCG	2 cut(s)	27, 80
MwoI	GCNNNNNNNGC	3 cut(s)	107, 131, 136
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	5 cut(s)	178, 213, 217, 235, 252
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	31, 76, 180
NmeAIII	GCCGAG	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	8
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	2 cut(s)	216, 220
Psp1406I	AACGTT	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	31, 76, 180
PspPI	GGNCC	3 cut(s)	29, 74, 419
PsuI	RGATCY	1 cut(s)	178
PvuI	CGATCG	2 cut(s)	216, 220
RseI	CAYNNNNRTG	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	160
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	178, 213, 217, 235, 252
Sau96I	GGNCC	3 cut(s)	29, 74, 419
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	161, 207, 282, 324, 394
Sfr303I	CCGCGG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	28
SinI	GGWCC	2 cut(s)	29, 74
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	194, 313, 377
SsiI	CCGC	6 cut(s)	25, 27, 78, 128, 132, 182
StyD4I	CCNGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	207, 282
TaqI	TCGA	5 cut(s)	148, 161, 212, 216, 381
TasI	AATT	3 cut(s)	194, 313, 377
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	17, 393
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	29, 74
XmiI	GTMKAC	2 cut(s)	161, 334
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.