RchiOBHm_Chr2g0136641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001336
Physical Location & Seq
Reverse (-)
53967370 .. 53969218
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50743

Sequence Viewer

Length: 258 bp
ATGAAACCCGTCTTGATAGATGATGCCGCAGTAATCTCTCTCCCTCTCATCACATACACTGCATCAATCTCTAATCACAGACGCCCCATCAATCTCTCTCCCTCTGACGCCGACTCATCACGATTTTGGGTTGGAAATCGAAGCCTCACTCAAGCAAGGCTGCTTGGCGATTTGATTAAGATAGGTGACCTTGGAGTTCTTGGAACTGGAATACCGATAGGAAAACTTGATAATGTATGTTGTTGCAGCTGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.18

Weight (kDa)

7.72

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AcyI GRCGYC 2 cut(s) 82, 108
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 160, 246
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 95
BisI GCNGC 3 cut(s) 27, 161, 247
BlsI GCNGC 3 cut(s) 28, 162, 248
BmsI GCATC 2 cut(s) 13, 71
BpuEI CTTGAG 1 cut(s) 135
BsaHI GRCGYC 2 cut(s) 82, 108
BsaJI CCNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 147
BspACI CCGC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 190
BssNI GRCGYC 2 cut(s) 82, 108
BssT1I CCWWGG 1 cut(s) 190
BstACI GRCGYC 2 cut(s) 82, 108
BstEII GGTNACC 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CseI GACGC 2 cut(s) 90, 116
CviJI RGCY 3 cut(s) 144, 160, 249
CviKI_1 RGCY 3 cut(s) 144, 160, 249
Eco130I CCWWGG 1 cut(s) 190
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaiI YATR 2 cut(s) 55, 238
Fnu4HI GCNGC 3 cut(s) 27, 161, 247
Fsp4HI GCNGC 3 cut(s) 27, 161, 247
GluI GCNGC 3 cut(s) 27, 161, 247
HgaI GACGC 2 cut(s) 90, 116
Hin1I GRCGYC 2 cut(s) 82, 108
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 13, 120
HpyCH4V TGCA 2 cut(s) 62, 246
Hsp92I GRCGYC 2 cut(s) 82, 108
LpnPI CCDG 2 cut(s) 192, 235
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 2 cut(s) 13, 71
MaeIII GTNAC 1 cut(s) 185
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 54, 112, 155
MseI TTAA 2 cut(s) 177, 256
MspA1I CMGCKG 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 185
PkrI GCNGC 3 cut(s) 28, 162, 248
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspEI GGTNACC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 249
SaqAI TTAA 2 cut(s) 177, 256
SatI GCNGC 3 cut(s) 27, 161, 247
SchI GAGTC 1 cut(s) 107
SetI ASST 3 cut(s) 187, 192, 251
SfaNI GCATC 2 cut(s) 13, 71
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SsiI CCGC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 1 cut(s) 139
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 177, 256
Tru9I TTAA 2 cut(s) 177, 256
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 160, 246
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.