Rh5AG145200

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001336
Physical Location & Seq
Forward (+)
15348002 .. 15348793
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG145200.1

Sequence Viewer

Length: 792 bp
ATGCATATAGAGTCTACTGCAGCTTTAGGGCAGTCCCCTTTAGGACCACCCACTCAAACATTCCCACCTTCAGTTTTAGGTTCAGGTTCAGGTGTTGAATCTGAACCTGGCAGTCACAACATACAACCCCCTGCTGTAATTGGGCAGAAAAGAAAAGAACCTGCTAACAAAAGTCCTCTTTGGGCACATTTTACTAGATGTAAACTCCCGAACTCAGACCAAATAGATACATGTTGGTGCACTTGTAACAATTGTAATGAGAAAGTCTTGTGTGATAGTAAAAAGAATGGGACAAGCTCAATGTGGTCACATACTAGGAAATGTGGCACTCATCCATTAAACGGAGAATCTGATCCCAAGCAGGCTAAGTTGAATAAGGATAATGTGAGTGGAGCTCCAACATACCATAAGTATAACCGGAAAAGGTGTGATGATAGGTGCATATATATGATTATCAAGGATGAACTTCCTTTTAGGCATGTAGAGAAAGAAGGATTTCAAGCTTTCTGTAAAGAATTGGAGCCATCTTGGCCAGGAATGAACAGAAAGCAGGTTGCTAAGGGTGTCATAGATAGGTTTAATTTTGAAAAGGCTGTATTGTTGAGTCAATTAAGGGAAAATGAGACAAGGATCTCAATTACCACCGACACTTGGACATCGATCCAGAATATAAATTACTTGGTGTTAACTGCTCATTTTATGGACAGTGACTGGAAATTGTACAAAAGGATCATAAACTTTTGTACAATTACTAGTCATAAGGGAGAGGAGATTGGAAGGGTAGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

263

Amino Acids

29.75

Weight (kDa)

8.71

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 169, 541
AccI GTMKAC 1 cut(s) 14
AclWI GGATC 4 cut(s) 347, 638, 655, 737
AcoI YGGCCR 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 2 cut(s) 722, 745
AfiI CCNNNNNNNGG 2 cut(s) 341, 651
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 4 cut(s) 98, 373, 500, 587
AhlI ACTAGT 1 cut(s) 752
AjnI CCWGG 2 cut(s) 106, 532
AluBI AGCT 4 cut(s) 23, 297, 395, 503
AluI AGCT 4 cut(s) 23, 297, 395, 503
Alw21I GWGCWC 2 cut(s) 242, 397
Alw26I GTCTC 1 cut(s) 617
Alw44I GTGCAC 1 cut(s) 238
AlwI GGATC 4 cut(s) 347, 638, 655, 737
AlwNI CAGNNNCTG 1 cut(s) 711
AoxI GGCC 1 cut(s) 530
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 187, 242
BalI TGGCCA 1 cut(s) 532
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 242, 397
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 532
BciT130I CCWGG 2 cut(s) 108, 534
BcoDI GTCTC 1 cut(s) 617
BcuI ACTAGT 1 cut(s) 752
BfaI CTAG 3 cut(s) 195, 315, 753
BfmI CTRYAG 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 169, 541
BglI GCCNNNNNGGC 1 cut(s) 529
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 108, 534
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 2 cut(s) 108, 534
BplI GAGNNNNNCTC 2 cut(s) 379, 411
Bpu10I CCTNAGC 1 cut(s) 558
Bsa29I ATCGAT 1 cut(s) 659
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 651
Bse1I ACTGG 1 cut(s) 716
BseBI CCWGG 2 cut(s) 108, 534
BseCI ATCGAT 1 cut(s) 659
BseGI GGATG 2 cut(s) 331, 466
BseLI CCNNNNNNNGG 2 cut(s) 341, 651
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 716
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 2 cut(s) 187, 242
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 532
BshVI ATCGAT 1 cut(s) 659
BsiHKAI GWGCWC 2 cut(s) 242, 397
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 2 cut(s) 19, 304
BslI CCNNNNNNNGG 2 cut(s) 341, 651
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 19, 304
BsnI GGCC 1 cut(s) 532
Bsp1286I GDGCHC 3 cut(s) 187, 242, 397
Bsp1407I TGTACA 2 cut(s) 720, 743
Bsp143I GATC 4 cut(s) 352, 630, 660, 729
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 1 cut(s) 227
BspDI ATCGAT 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 2 cut(s) 169, 541
BspPI GGATC 4 cut(s) 347, 638, 655, 737
BsrGI TGTACA 2 cut(s) 720, 743
BsrI ACTGG 1 cut(s) 716
BssMI GATC 4 cut(s) 352, 630, 660, 729
Bst2UI CCWGG 2 cut(s) 108, 534
Bst4CI ACNGT 1 cut(s) 707
BstAUI TGTACA 2 cut(s) 720, 743
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 214, 366, 558
BstF5I GGATG 2 cut(s) 331, 466
BstKTI GATC 4 cut(s) 355, 633, 663, 732
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 352, 630, 660, 729
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNI CCWGG 2 cut(s) 108, 534
BstNSI RCATGY 2 cut(s) 234, 482
BstSCI CCNGG 2 cut(s) 106, 532
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 2 cut(s) 187, 242
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 630
BstYI RGATCY 1 cut(s) 630
Bsu15I ATCGAT 1 cut(s) 659
BsuRI GGCC 1 cut(s) 532
BsuTUI ATCGAT 1 cut(s) 659
BtsCI GGATG 2 cut(s) 331, 466
BtsIMutI CAGTG 1 cut(s) 712
BveI ACCTGC 2 cut(s) 169, 541
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 659
Csp6I GTAC 2 cut(s) 721, 744
CviAII CATG 2 cut(s) 231, 479
CviJI RGCY 8 cut(s) 23, 297, 365, 395, 503, 523, 532, 593
CviKI_1 RGCY 8 cut(s) 23, 297, 365, 395, 503, 523, 532, 593
CviQI GTAC 2 cut(s) 721, 744
DdeI CTNAG 3 cut(s) 214, 366, 558
DpnI GATC 4 cut(s) 354, 632, 662, 731
DpnII GATC 4 cut(s) 352, 630, 660, 729
EaeI YGGCCR 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 106, 532
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 2 cut(s) 234, 482
FaqI GGGAC 2 cut(s) 19, 304
FatI CATG 2 cut(s) 230, 478
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 318, 473
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 195, 315, 753
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 532
HapII CCGG 1 cut(s) 418
Hin1II CATG 2 cut(s) 234, 482
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 4 cut(s) 11, 98, 347, 604
HpaI GTTAAC 1 cut(s) 687
HpaII CCGG 1 cut(s) 418
Hpy166II GTNNAC 4 cut(s) 15, 203, 240, 687
Hpy188I TCNGA 3 cut(s) 103, 217, 352
Hpy188III TCNNGA 2 cut(s) 208, 664
Hpy8I GTNNAC 4 cut(s) 15, 203, 240, 687
HpyAV CCTTC 3 cut(s) 78, 485, 771
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4V TGCA 4 cut(s) 4, 20, 240, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 3 cut(s) 214, 366, 558
Hsp92II CATG 2 cut(s) 234, 482
KspAI GTTAAC 1 cut(s) 687
Kzo9I GATC 4 cut(s) 352, 630, 660, 729
LmnI GCTCC 3 cut(s) 392, 400, 520
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 3 cut(s) 195, 315, 753
MaeIII GTNAC 4 cut(s) 113, 245, 306, 707
MalI GATC 4 cut(s) 354, 632, 662, 731
MboI GATC 4 cut(s) 352, 630, 660, 729
MfeI CAATTG 1 cut(s) 250
MflI RGATCY 1 cut(s) 630
MhlI GDGCHC 3 cut(s) 187, 242, 397
MlsI TGGCCA 1 cut(s) 532
MluCI AATT 9 cut(s) 138, 250, 515, 580, 608, 636, 673, 716, 747
MluNI TGGCCA 1 cut(s) 532
MlyI GAGTC 2 cut(s) 20, 613
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 2 cut(s) 186, 760
Mox20I TGGCCA 1 cut(s) 532
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 532
MseI TTAA 4 cut(s) 338, 579, 611, 686
MslI CAYNNNNRTG 2 cut(s) 235, 446
Msp20I TGGCCA 1 cut(s) 532
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 2 cut(s) 108, 534
MunI CAATTG 1 cut(s) 250
MvaI CCWGG 2 cut(s) 108, 534
MwoI GCNNNNNNNGC 1 cut(s) 529
NdeII GATC 4 cut(s) 352, 630, 660, 729
NlaIII CATG 2 cut(s) 234, 482
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 3 cut(s) 113, 306, 707
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 234, 482
PciI ACATGT 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 98, 347
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 19, 612
PpsI GAGTC 2 cut(s) 19, 612
PscI ACATGT 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 106, 532
PspGI CCWGG 2 cut(s) 106, 532
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 711
PsuI RGATCY 1 cut(s) 630
RsaI GTAC 2 cut(s) 722, 745
RsaNI GTAC 2 cut(s) 721, 744
RseI CAYNNNNRTG 2 cut(s) 235, 446
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 4 cut(s) 338, 579, 611, 686
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 352, 630, 660, 729
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 2 cut(s) 20, 613
ScrFI CCNGG 2 cut(s) 108, 534
SduI GDGCHC 3 cut(s) 187, 242, 397
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 235, 446
SpeI ACTAGT 1 cut(s) 752
Sse9I AATT 9 cut(s) 138, 250, 515, 580, 608, 636, 673, 716, 747
SspMI CTAG 3 cut(s) 195, 315, 753
SstI GAGCTC 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 106, 532
TaaI ACNGT 1 cut(s) 707
TaqI TCGA 1 cut(s) 659
TasI AATT 9 cut(s) 138, 250, 515, 580, 608, 636, 673, 716, 747
TatI WGTACW 2 cut(s) 720, 743
TfiI GAWTC 2 cut(s) 98, 347
Tru1I TTAA 4 cut(s) 338, 579, 611, 686
Tru9I TTAA 4 cut(s) 338, 579, 611, 686
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 3 cut(s) 113, 306, 707
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 3 cut(s) 113, 306, 707
TspDTI ATGAA 2 cut(s) 477, 554
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 712
VneI GTGCAC 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 2 cut(s) 234, 482
XmiI GTMKAC 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 3 cut(s) 195, 315, 753
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.