Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

38938809 .. 38939354

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAATTGTATTTGTTTGAGTTCTTGCGATCCGGCATTGTTTGGCTTTTGTGAGAAACTGGAGGCTGATAAGGCGTATGAGGTGGAAGAGTATATGAATAAGGTGGGAGTGAGTGTAGAAGAGCCTGAGATTGCAGCCTTATTAAAGGTGAGTGCAGAGACAGGAAGAGGGGAGAGGGTTTATGATTACTTGCACAAGTTGAGGAATGCTGTGAGGTGTGTTCATGAATCGACGGCCAAGATCATTGAGGATTGGTATCGTGATGGAAGGGCTAGTGAAGTGGGTGAGGTGAATTGGGACTCGGGTAGGGTCAAAGAGGTGGTTTTGAGGAATGGAGGAGGGTGGCATGGGCAGGAGTGGGTTGGGAAGGGGGATTGGTCTGTGCAGAGAGCCAATGTGGATTCTGACAGCAGGTGTTGCTCCTGTGGTGAGCATTTGGTTTTTTCTTCCACCTCATACGCCTTATCAGCCTCCAGTTTCTCGCAAAAGCCAAACAATGCCGGATCGCAAGTGCGCAACCTCGGCAATACATTATACTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

182

Amino Acids

20.05

Weight (kDa)

5.28

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	6 - 92	2.3e-31	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	402
Acc16I	TGCGCA	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	402
AclWI	GGATC	2 cut(s)	23, 511
AcoI	YGGCCR	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	23, 511
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	4 cut(s)	160, 296, 301, 440
AvaI	CYCGRG	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	402
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	80, 457
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	2 cut(s)	63, 474
Bse8I	GATNNNNATC	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	63, 474
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	2 cut(s)	174, 404
BshFI	GGCC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	32, 501
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	28, 240, 503
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	23, 511
BspQI	GCTCTTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	63, 474
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	28, 240, 503
Bst6I	CTCTTC	3 cut(s)	81, 114, 160
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	31, 243, 506
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	28, 240, 503
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 417, 467, 522
BstV1I	GCAGC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	516
CviAII	CATG	2 cut(s)	224, 347
CviJI	RGCY	9 cut(s)	45, 65, 124, 137, 236, 272, 392, 470, 490
CviKI_1	RGCY	9 cut(s)	45, 65, 124, 137, 236, 272, 392, 470, 490
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	30, 242, 505
DpnII	GATC	3 cut(s)	28, 240, 503
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	81, 114, 160
EarI	CTCTTC	3 cut(s)	81, 114, 160
Eco88I	CYCGRG	1 cut(s)	301
FaeI	CATG	2 cut(s)	227, 350
FaiI	YATR	9 cut(s)	78, 93, 95, 183, 225, 348, 457, 535, 544
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	223, 346
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	273
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	80, 457
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	2 cut(s)	32, 501
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	2 cut(s)	227, 350
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	227, 299, 401
HpaII	CCGG	2 cut(s)	32, 501
HphI	GGTGA	4 cut(s)	160, 296, 301, 440
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	2 cut(s)	224, 260
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	261, 361
HpyCH4V	TGCA	4 cut(s)	134, 155, 193, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 417, 467, 522
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	227, 350
HspAI	GCGC	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	28, 240, 503
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	9 cut(s)	44, 45, 138, 147, 338, 397, 436, 487, 514
Lsp1109I	GCAGC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	273
MalI	GATC	3 cut(s)	30, 242, 505
MboI	GATC	3 cut(s)	28, 240, 503
MboII	GAAGA	4 cut(s)	98, 131, 177, 438
MluCI	AATT	2 cut(s)	4, 292
MlyI	GAGTC	1 cut(s)	293
MseI	TTAA	1 cut(s)	143
MspI	CCGG	2 cut(s)	32, 501
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	4 cut(s)	71, 417, 467, 522
NdeII	GATC	3 cut(s)	28, 240, 503
NlaIII	CATG	2 cut(s)	227, 350
NmeAIII	GCCGAG	1 cut(s)	501
NsbI	TGCGCA	1 cut(s)	515
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	227, 401
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	28, 240, 503
SchI	GAGTC	1 cut(s)	293
SetI	ASST	9 cut(s)	84, 105, 150, 218, 291, 321, 416, 455, 522
Sse9I	AATT	2 cut(s)	4, 292
SspMI	CTAG	1 cut(s)	273
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	4, 292
TfiI	GAWTC	2 cut(s)	227, 401
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	17, 110, 212, 240
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.