Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012624.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

3866 .. 5737

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012624.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgttgttattcaatttttattgtcgattacttgattttgatcaaaagaaactccaaggtcaagaagctcaagaagctcaagctcaccgtcctccagttctacaaggtcgacgactctggcaaggtgcagaagctgaggaaggagtgaaagagaaagcagaggaagagcatttttctggattaaaccctggatgtttagttcagccttcaaaccccaacccaaaccctgaccctaacctaaatatcatccctcaagtagagtcacagtcagtcccaaccattcctacgcacgaagggcatgataatacatttacgtttagggcaggtggaaaaagaaagaaagcaactagggtgaggacagggggtaaaaatgcaaagccagcgttaggaagaagcaaaacctgggagtgtttcactaggccgaaactgagtgatgggagtgataatcaagaggtcgcacagtgcaatttctgccaagaaattgtacctgcctccaccactgtgaatgggacttcttcaatgtggtctcatgcaaagaagtgcaaaaccagccctctttaccagccaccaccagaaacgaagggtcaaaccactcttaaatcagataatgtgagtgggggggttacttaccataaattcagccaacctagatgtgatttagggtgtgttaggatgatcatcatggatgaacttcctttcatgcatgttgaaggggatgggtttaaagagtttgttaaggagttgcagcctcagtggaaaagaatgaacagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

258

Amino Acids

29.0

Weight (kDa)

8.86

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	314
Acc36I	ACCTGC	2 cut(s)	314, 496
AccI	GTMKAC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	635
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	13, 210, 519, 710
AjnI	CCWGG	2 cut(s)	187, 401
AleI	CACNNNNGTG	1 cut(s)	500
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	68, 77, 83, 134
AluI	AGCT	4 cut(s)	68, 77, 83, 134
Alw26I	GTCTC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	745
ApoI	RAATTY	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	77, 364
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	757
BccI	CCATC	2 cut(s)	428, 710
BciT130I	CCWGG	2 cut(s)	189, 403
BclI	TGATCA	2 cut(s)	40, 675
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	3 cut(s)	348, 417, 648
BfuAI	ACCTGC	2 cut(s)	314, 496
BisI	GCNGC	1 cut(s)	746
BlsI	GCNGC	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	189, 403
BmrFI	CCNGG	2 cut(s)	189, 403
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	3 cut(s)	54, 63, 237
BsaBI	GATNNNNATC	2 cut(s)	39, 677
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	55, 187, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	39, 677
BseBI	CCWGG	2 cut(s)	189, 403
BseDI	CCNNGG	3 cut(s)	55, 187, 402
BseGI	GGATG	5 cut(s)	197, 246, 678, 691, 721
BseJI	GATNNNNATC	2 cut(s)	39, 677
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	126, 419, 764
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	257, 523
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	257, 523
BsnI	GGCC	1 cut(s)	421
Bso31I	GGTCTC	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	40, 675
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	3 cut(s)	127, 420, 763
BspMI	ACCTGC	2 cut(s)	314, 496
BspQI	GCTCTTC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	55, 187, 402
BssMI	GATC	2 cut(s)	40, 675
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	189, 403
Bst4CI	ACNGT	4 cut(s)	89, 267, 462, 502
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	135, 428, 750
BstF5I	GGATG	5 cut(s)	197, 246, 678, 691, 721
BstKTI	GATC	2 cut(s)	43, 678
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	2 cut(s)	40, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 295, 380, 471, 549
BstNI	CCWGG	2 cut(s)	189, 403
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	2 cut(s)	187, 401
BstV1I	GCAGC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	421
BtsCI	GGATG	5 cut(s)	197, 246, 678, 691, 721
BtsIMutI	CAGTG	3 cut(s)	467, 498, 758
BveI	ACCTGC	2 cut(s)	314, 496
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	5 cut(s)	299, 530, 682, 700, 704
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	3 cut(s)	135, 428, 750
DpnI	GATC	2 cut(s)	42, 677
DpnII	GATC	2 cut(s)	40, 675
DraI	TTTAAA	1 cut(s)	724
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	187, 401
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	5 cut(s)	302, 533, 685, 703, 707
FaiI	YATR	6 cut(s)	300, 531, 633, 683, 701, 705
FaqI	GGGAC	2 cut(s)	257, 523
FatI	CATG	5 cut(s)	298, 529, 681, 699, 703
FbaI	TGATCA	2 cut(s)	40, 675
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	746
FokI	GGATG	5 cut(s)	204, 233, 685, 698, 728
Fsp4HI	GCNGC	1 cut(s)	746
FspBI	CTAG	3 cut(s)	348, 417, 648
GluI	GCNGC	1 cut(s)	746
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	421
Hin1II	CATG	5 cut(s)	302, 533, 685, 703, 707
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	114, 260
HphI	GGTGA	2 cut(s)	77, 364
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	604
Hpy188III	TCNNGA	4 cut(s)	62, 71, 177, 449
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	5 cut(s)	134, 216, 287, 574, 704
HpyCH4III	ACNGT	4 cut(s)	89, 267, 462, 502
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	7 cut(s)	128, 374, 465, 533, 543, 703, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 295, 380, 471, 549
HpyF3I	CTNAG	3 cut(s)	135, 428, 750
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	5 cut(s)	302, 533, 685, 703, 707
Ksp22I	TGATCA	2 cut(s)	40, 675
Kzo9I	GATC	2 cut(s)	40, 675
LguI	GCTCTTC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	757
MaeI	CTAG	3 cut(s)	348, 417, 648
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	261, 622
MalI	GATC	2 cut(s)	42, 677
MboI	GATC	2 cut(s)	40, 675
MboII	GAAGA	3 cut(s)	176, 402, 507
MluCI	AATT	4 cut(s)	13, 466, 480, 635
MlyI	GAGTC	2 cut(s)	108, 269
MnlI	CCTC	9 cut(s)	102, 130, 154, 261, 348, 445, 502, 564, 759
Mph1103I	ATGCAT	1 cut(s)	705
MseI	TTAA	4 cut(s)	182, 597, 723, 735
MslI	CAYNNNNRTG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	189, 403
MvaI	CCWGG	2 cut(s)	189, 403
MwoI	GCNNNNNNNGC	5 cut(s)	74, 295, 380, 471, 549
NdeII	GATC	2 cut(s)	40, 675
NlaIII	CATG	5 cut(s)	302, 533, 685, 703, 707
NmuCI	GTSAC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	1 cut(s)	707
OliI	CACNNNNGTG	1 cut(s)	500
PaqCI	CACCTGC	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	747
PleI	GAGTC	2 cut(s)	108, 268
PpsI	GAGTC	2 cut(s)	108, 268
Psp6I	CCWGG	2 cut(s)	187, 401
PspGI	CCWGG	2 cut(s)	187, 401
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	500
SalI	GTCGAC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	182, 597, 723, 735
SatI	GCNGC	1 cut(s)	746
Sau3AI	GATC	2 cut(s)	40, 675
SchI	GAGTC	2 cut(s)	108, 269
ScrFI	CCNGG	2 cut(s)	189, 403
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	3 cut(s)	69, 78, 252
SmoI	CTYRAG	3 cut(s)	69, 78, 252
Sse9I	AATT	4 cut(s)	13, 466, 480, 635
SspMI	CTAG	3 cut(s)	348, 417, 648
StyD4I	CCNGG	2 cut(s)	187, 401
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	4 cut(s)	89, 267, 462, 502
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	25, 109
TasI	AATT	4 cut(s)	13, 466, 480, 635
Tru1I	TTAA	4 cut(s)	182, 597, 723, 735
Tru9I	TTAA	4 cut(s)	182, 597, 723, 735
TscAI	CASTG	3 cut(s)	467, 505, 758
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	1 cut(s)	745
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	688, 702
TspRI	CASTG	3 cut(s)	467, 505, 758
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	3 cut(s)	348, 417, 648
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.