Rmu_sc0002480.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002480.1
OG0001336
Physical Location & Seq
Reverse (-)
65731 .. 66081
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002480.1_g000015.1.cds

Sequence Viewer

Length: 351 bp
atggcttctacaagtaggtctggaagtcattgttgttcatccccttccataacttctaacatgggtactgcaagttgtcaatcaataggtgttcccccaaataataaccaaaacactataccacctccacaaaacattacccccaactcagttcctattccaaccccaactgaaacaccaaatccagatcctcaatcggtggaagctactgcggggttggggaaaagaaggtgtcaagataagaccacaaagggtaggaaacagagtcgagtgtgggactgtttcacaaggcctttgctccctgatggcaagtctgaccccgataatgcacaatgtattattgtaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.32

Weight (kDa)

8.88

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 182
AfaI GTAC 1 cut(s) 67
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 290
BccI CCATC 1 cut(s) 299
BseGI GGATG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 292
BslFI GGGAC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 182
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 38
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 5, 206, 292
CviKI_1 RGCY 3 cut(s) 5, 206, 292
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 292
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 50, 62, 119
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 205
FokI GGATG 1 cut(s) 25
HaeIII GGCC 1 cut(s) 292
Hin1II CATG 1 cut(s) 64
HinfI GANTC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 21, 185, 236
HpyAV CCTTC 2 cut(s) 54, 222
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 71, 329
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 3 cut(s) 6, 198, 315
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MflI RGATCY 1 cut(s) 187
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 2 cut(s) 135, 201
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 292
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 274
SetI ASST 5 cut(s) 20, 91, 127, 208, 233
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 1 cut(s) 212
StuI AGGCCT 1 cut(s) 292
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.