Rh1BG037500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
5027324 .. 5035061
7738 bp
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UTR
Exon/CDS
Intron
Rh1BG037500.1

Sequence Viewer

Length: 474 bp
ATGGACAAATCTCTTGCATGTTGTTTCCTTCACCAAAAGGTCAAGAAGGTCAAGCTCACCGTCCTCCAGTTCTACAAGGTCGACGACTTCCGGCAAGGTGCAGAAGCTGAGGAAGGAGTGAAAGAGAAGGCAGAGGGTAATTTTGGAGCTAAAAAGTACTATTGCAGGGACCTCATACTTCAATCCCCTCCTGACACTATGAAGAAACAACCAAATAAGTCCAGTAAGGGTTTGAAGAAGAGGAAAAGGCAAGTAGGCATTCCTGAAGAGGAGAATATTGACATGAAGAAGCTACTAAAAGATTACCCTGCACCTTTGAAGTGCTTGTGGATTTGGGCAAGGGACAATTTGGCAAATGGGAGGACAATCTCCTTCAATTTGGAACAGAAAGTGTTTGGCATCGACAGGAAGCATTATCTATTTAAGTCAGACATTCATGCATTGTGTACAATGATGAACTATCAGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.31

Weight (kDa)

9.43

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 158, 448
AgsI TTSAA 4 cut(s) 182, 235, 319, 376
AluBI AGCT 4 cut(s) 55, 107, 149, 292
AluI AGCT 4 cut(s) 55, 107, 149, 292
AlwNI CAGNNNCTG 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 23, 49
AvaII GGWCC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 170
BmsI GCATC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 67, 222
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 67, 222
BseRI GAGGAG 1 cut(s) 284
BsgI GTGCAG 2 cut(s) 120, 294
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 2 cut(s) 182, 356
BsmFI GGGAC 2 cut(s) 182, 356
BsmI GAATGC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 446
BsrI ACTGG 2 cut(s) 67, 222
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 233, 261
BstAUI TGTACA 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 21
CaiI CAGNNNCTG 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 157, 447
CviAII CATG 3 cut(s) 18, 283, 437
CviJI RGCY 4 cut(s) 55, 107, 149, 292
CviKI_1 RGCY 4 cut(s) 55, 107, 149, 292
CviQI GTAC 2 cut(s) 157, 447
DdeI CTNAG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 233, 261
EarI CTCTTC 2 cut(s) 233, 261
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 3 cut(s) 21, 286, 440
FaiI YATR 5 cut(s) 19, 176, 200, 284, 438
FaqI GGGAC 2 cut(s) 182, 356
FatI CATG 3 cut(s) 17, 282, 436
FblI GTMKAC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 50
HapII CCGG 1 cut(s) 91
Hin1II CATG 3 cut(s) 21, 286, 440
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaII CCGG 1 cut(s) 91
HphI GGTGA 2 cut(s) 23, 49
Hpy166II GTNNAC 2 cut(s) 82, 447
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 3 cut(s) 43, 191, 263
Hpy8I GTNNAC 2 cut(s) 82, 447
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 5 cut(s) 38, 40, 107, 121, 382
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 5 cut(s) 17, 101, 165, 311, 440
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 21, 286, 440
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 80, 104, 151, 204, 235, 276, 321, 391, 449
LweI GCATC 1 cut(s) 408
MboII GAAGA 5 cut(s) 214, 247, 250, 278, 298
MluCI AATT 3 cut(s) 139, 346, 376
MnlI CCTC 8 cut(s) 74, 103, 127, 182, 198, 234, 262, 354
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 258
NlaIII CATG 3 cut(s) 21, 286, 440
NlaIV GGNNCC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 21
PctI GAATGC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 107
RsaI GTAC 2 cut(s) 158, 448
RsaNI GTAC 2 cut(s) 157, 447
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 423
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 158
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 169
Sse9I AATT 3 cut(s) 139, 346, 376
SspI AATATT 1 cut(s) 277
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 81, 402
TasI AATT 3 cut(s) 139, 346, 376
TatI WGTACW 2 cut(s) 156, 446
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TspDTI ATGAA 4 cut(s) 215, 299, 425, 470
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.