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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 242, 428 |
| AclWI | GGATC | 1 cut(s) | 212 |
| AcoI | YGGCCR | 1 cut(s) | 412 |
| AfaI | GTAC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AgsI | TTSAA | 3 cut(s) | 57, 409, 424 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| AluBI | AGCT | 2 cut(s) | 236, 343 |
| AluI | AGCT | 2 cut(s) | 236, 343 |
| Alw26I | GTCTC | 1 cut(s) | 379 |
| AlwI | GGATC | 1 cut(s) | 212 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| AoxI | GGCC | 4 cut(s) | 17, 320, 400, 412 |
| BalI | TGGCCA | 1 cut(s) | 414 |
| BccI | CCATC | 1 cut(s) | 329 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BcoDI | GTCTC | 1 cut(s) | 379 |
| BfaI | CTAG | 1 cut(s) | 351 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse1I | ACTGG | 2 cut(s) | 73, 125 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseNI | ACTGG | 2 cut(s) | 73, 125 |
| BseYI | CCCAGC | 1 cut(s) | 247 |
| BshFI | GGCC | 4 cut(s) | 19, 322, 402, 414 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmAI | GTCTC | 1 cut(s) | 379 |
| BsmI | GAATGC | 1 cut(s) | 430 |
| BsnI | GGCC | 4 cut(s) | 19, 322, 402, 414 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspACI | CCGC | 2 cut(s) | 242, 428 |
| BspANI | GGCC | 4 cut(s) | 19, 322, 402, 414 |
| BspPI | GGATC | 1 cut(s) | 212 |
| BsrI | ACTGG | 2 cut(s) | 73, 125 |
| BssMI | GATC | 1 cut(s) | 217 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst4CI | ACNGT | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 1 cut(s) | 178 |
| BstF5I | GGATG | 1 cut(s) | 38 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 1 cut(s) | 379 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BsuRI | GGCC | 4 cut(s) | 19, 322, 402, 414 |
| BtsCI | GGATG | 1 cut(s) | 38 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 355, 390 |
| CviAII | CATG | 1 cut(s) | 61 |
| CviJI | RGCY | 8 cut(s) | 5, 19, 236, 247, 322, 343, 402, 414 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 19, 236, 247, 322, 343, 402, 414 |
| CviQI | GTAC | 1 cut(s) | 156 |
| DdeI | CTNAG | 1 cut(s) | 178 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| EaeI | YGGCCR | 1 cut(s) | 412 |
| Eco147I | AGGCCT | 1 cut(s) | 322 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| FaeI | CATG | 1 cut(s) | 64 |
| FaiI | YATR | 4 cut(s) | 50, 62, 304, 417 |
| FatI | CATG | 1 cut(s) | 60 |
| FauI | CCCGC | 1 cut(s) | 235 |
| FokI | GGATG | 1 cut(s) | 25 |
| FspBI | CTAG | 1 cut(s) | 351 |
| GsaI | CCCAGC | 1 cut(s) | 251 |
| HaeIII | GGCC | 4 cut(s) | 19, 322, 402, 414 |
| Hin1II | CATG | 1 cut(s) | 64 |
| HindIII | AAGCTT | 1 cut(s) | 341 |
| HinfI | GANTC | 1 cut(s) | 295 |
| Hpy188III | TCNNGA | 3 cut(s) | 215, 221, 406 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyCH4III | ACNGT | 1 cut(s) | 374 |
| HpyCH4IV | ACGT | 1 cut(s) | 397 |
| HpyCH4V | TGCA | 2 cut(s) | 359, 366 |
| HpyF3I | CTNAG | 1 cut(s) | 178 |
| HpySE526I | ACGT | 1 cut(s) | 397 |
| Hsp92II | CATG | 1 cut(s) | 64 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 1 cut(s) | 333 |
| LpnPI | CCDG | 8 cut(s) | 6, 33, 54, 138, 228, 233, 234, 345 |
| MaeI | CTAG | 1 cut(s) | 351 |
| MaeII | ACGT | 1 cut(s) | 397 |
| MaeIII | GTNAC | 2 cut(s) | 64, 131 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MlsI | TGGCCA | 1 cut(s) | 414 |
| MluCI | AATT | 2 cut(s) | 28, 224 |
| MluNI | TGGCCA | 1 cut(s) | 414 |
| MlyI | GAGTC | 1 cut(s) | 304 |
| MnlI | CCTC | 1 cut(s) | 413 |
| Mox20I | TGGCCA | 1 cut(s) | 414 |
| MscI | TGGCCA | 1 cut(s) | 414 |
| MslI | CAYNNNNRTG | 1 cut(s) | 396 |
| Msp20I | TGGCCA | 1 cut(s) | 414 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| Mva1269I | GAATGC | 1 cut(s) | 430 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIII | CATG | 1 cut(s) | 64 |
| PceI | AGGCCT | 1 cut(s) | 322 |
| PctI | GAATGC | 1 cut(s) | 430 |
| PleI | GAGTC | 1 cut(s) | 303 |
| PpsI | GAGTC | 1 cut(s) | 303 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspFI | CCCAGC | 1 cut(s) | 247 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 19, 51 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| RseI | CAYNNNNRTG | 1 cut(s) | 396 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| SchI | GAGTC | 1 cut(s) | 304 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SetI | ASST | 5 cut(s) | 133, 175, 238, 345, 400 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 396 |
| Sse9I | AATT | 2 cut(s) | 28, 224 |
| SseBI | AGGCCT | 1 cut(s) | 322 |
| SsiI | CCGC | 2 cut(s) | 242, 428 |
| SspMI | CTAG | 1 cut(s) | 351 |
| StuI | AGGCCT | 1 cut(s) | 322 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| TaaI | ACNGT | 1 cut(s) | 374 |
| TaiI | ACGT | 1 cut(s) | 400 |
| TaqI | TCGA | 1 cut(s) | 298 |
| TasI | AATT | 2 cut(s) | 28, 224 |
| TspDTI | ATGAA | 2 cut(s) | 27, 380 |
| XspI | CTAG | 1 cut(s) | 351 |