Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006458.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

44959 .. 45798

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006458.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggcttctaccagtaggtcaggaagtcattgttgttcatccccttccataacttctaacatgggtacagcaagttgtcaatcaataggtgttcccccaaataataaccaaaacactataccacctccacaaaacattacccctaactcagttcctattccaaccccaactaaaacaccaaatccagatcctcaatcggtagaagctactgcggggttggggaaaagaaggtgtcaagataagaccacaaagggtaggaaacagagtcgagtgtgggactgtttcacaaggcctttgctccctgatggcaagcctgaccccgataatgcacaatgtaattactgtaaagcaatagttcctgcatctagttcaaagaatggaaccagttcttgctggtcacatggaagaaattgcaaggttaaccctttatttgagaaacctatcgagaaagggcagactatattatgtagggataatgtaaccggggctccacaatatcacaaatttaatcaaggtaggatagatgagaagctgtacaagatgatcataagggatgaacttccctttaggcatgtagagggttttgggtttaaagagtttttgtatgaagctcagccacagtggattcaaccaagtaggaagttagtggccaagggagtgtgggaattgtaccaatctgagaagggaaagatgatgtccatctttgctcagcatgcaaagagagttagtgtaaccactgacacttggacatcaattcagaacattaactacatggtggtcactgcccatttcatggacagcgactggaagttgcacaaaaggaatataaacttttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

279

Amino Acids

31.31

Weight (kDa)

9.37

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	793
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	3 cut(s)	67, 536, 671
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	2 cut(s)	372, 629
AluBI	AGCT	3 cut(s)	206, 532, 611
AluI	AGCT	3 cut(s)	206, 532, 611
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	290, 648
ApoI	RAATTY	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	484
BalI	TGGCCA	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	490
BccI	CCATC	2 cut(s)	299, 707
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	484
BfaI	CTAG	1 cut(s)	366
BlpI	GCTNAGC	2 cut(s)	612, 708
Bme1390I	CCNGG	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	382, 489
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	371
Bpu1102I	GCTNAGC	2 cut(s)	612, 708
BpuMI	CCSGG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	483, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	12, 384, 809
Bse8I	GATNNNNATC	1 cut(s)	698
BseDI	CCNNGG	2 cut(s)	483, 651
BseGI	GGATG	2 cut(s)	38, 559
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMII	CTCAG	4 cut(s)	162, 626, 669, 722
BseNI	ACTGG	3 cut(s)	12, 384, 809
BshFI	GGCC	2 cut(s)	292, 650
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	292, 650
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	187, 543
Bsp1720I	GCTNAGC	2 cut(s)	612, 708
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	292, 650
BspCNI	CTCAG	4 cut(s)	161, 625, 670, 721
BspLI	GGNNCC	2 cut(s)	382, 489
BspPI	GGATC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	12, 384, 809
BssECI	CCNNGG	2 cut(s)	483, 651
BssMI	GATC	2 cut(s)	187, 543
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	281, 344, 621
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	311, 714
BstDEI	CTNAG	4 cut(s)	148, 612, 678, 708
BstF5I	GGATG	2 cut(s)	38, 559
BstKTI	GATC	2 cut(s)	190, 546
BstMBI	GATC	2 cut(s)	187, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNSI	RCATGY	2 cut(s)	575, 716
BstSCI	CCNGG	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	292, 650
BtsCI	GGATG	2 cut(s)	38, 559
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	626, 735, 780
Cac8I	GCNNGC	2 cut(s)	311, 714
CaiI	CAGNNNCTG	1 cut(s)	804
Csp6I	GTAC	3 cut(s)	66, 535, 670
CviAII	CATG	6 cut(s)	61, 401, 572, 713, 772, 793
CviJI	RGCY	9 cut(s)	5, 206, 292, 313, 488, 532, 611, 616, 650
CviKI_1	RGCY	9 cut(s)	5, 206, 292, 313, 488, 532, 611, 616, 650
CviQI	GTAC	3 cut(s)	66, 535, 670
DdeI	CTNAG	4 cut(s)	148, 612, 678, 708
DpnI	GATC	2 cut(s)	189, 545
DpnII	GATC	2 cut(s)	187, 543
DraI	TTTAAA	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	6 cut(s)	64, 404, 575, 716, 775, 796
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	60, 400, 571, 712, 771, 792
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	543
FokI	GGATG	2 cut(s)	25, 566
FriOI	GRGCYC	1 cut(s)	490
FspBI	CTAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	292, 650
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	6 cut(s)	64, 404, 575, 716, 775, 796
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	265, 625
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	679, 759
Hpy188III	TCNNGA	4 cut(s)	21, 185, 236, 445
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	54, 222, 676
HpyCH4III	ACNGT	3 cut(s)	281, 344, 621
HpyCH4V	TGCA	5 cut(s)	329, 362, 414, 716, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	4 cut(s)	148, 612, 678, 708
Hsp92II	CATG	6 cut(s)	64, 404, 575, 716, 775, 796
Ksp22I	TGATCA	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	187, 543
LmnI	GCTCC	2 cut(s)	303, 493
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	4 cut(s)	396, 478, 730, 778
MalI	GATC	2 cut(s)	189, 545
MboI	GATC	2 cut(s)	187, 543
MboII	GAAGA	1 cut(s)	417
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	5 cut(s)	337, 409, 503, 665, 753
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	135, 201, 571
Mox20I	TGGCCA	1 cut(s)	650
MroXI	GAANNNNTTC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	5 cut(s)	420, 507, 591, 765, 838
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	187, 543
NlaIII	CATG	6 cut(s)	64, 404, 575, 716, 775, 796
NlaIV	GGNNCC	2 cut(s)	382, 489
NmuCI	GTSAC	2 cut(s)	396, 778
NspI	RCATGY	2 cut(s)	575, 716
PaeI	GCATGC	1 cut(s)	716
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	625
PflMI	CCANNNNNTGG	1 cut(s)	793
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	382, 489
PsrI	GAACNNNNNNTAC	2 cut(s)	752, 784
PstNI	CAGNNNCTG	1 cut(s)	804
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	3 cut(s)	67, 536, 671
RsaNI	GTAC	3 cut(s)	66, 535, 670
SaqAI	TTAA	5 cut(s)	420, 507, 591, 765, 838
Sau3AI	GATC	2 cut(s)	187, 543
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	371
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	5 cut(s)	337, 409, 503, 665, 753
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	281, 344, 621
TaqI	TCGA	2 cut(s)	268, 444
TasI	AATT	5 cut(s)	337, 409, 503, 665, 753
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	5 cut(s)	420, 507, 591, 765, 838
Tru9I	TTAA	5 cut(s)	420, 507, 591, 765, 838
TscAI	CASTG	3 cut(s)	626, 742, 787
TseFI	GTSAC	2 cut(s)	396, 778
Tsp45I	GTSAC	2 cut(s)	396, 778
TspDTI	ATGAA	4 cut(s)	27, 570, 621, 781
TspRI	CASTG	3 cut(s)	626, 742, 787
Van91I	CCANNNNNTGG	1 cut(s)	793
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	2 cut(s)	575, 716
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.