Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041192.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 890

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtacaagctcagagaaggggcacaaatgcaagtactggagactgatcacatcattatttgtggagtgaacagtcatctttctttcatactaaagcaaataaacaagtatcatgaatttgctgtccgcttaggtactgctacagctaggaagcaaagaattcttcttatgtctgacttaccaagaaagcagatggacaagttagctgaccttattgccaaagattttaaccatatcgatatccttacaaaaagttgtagcctgagcttaacaaaatcatatgaaagagccgctgccaacaaggcacgtgccataattatactgccaacaaaggcagatcggtatgaagttgacactgatgcctttctatccgttctggctcttcaacctattcctaagatggaatccgtccccactattgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

141

Amino Acids

15.94

Weight (kDa)

9.3

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 291
AcsI	RAATTY	2 cut(s)	116, 159
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	5, 36, 136
AgsI	TTSAA	1 cut(s)	386
AluBI	AGCT	4 cut(s)	10, 146, 206, 267
AluI	AGCT	4 cut(s)	10, 146, 206, 267
Alw26I	GTCTC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	116, 159
BaeGI	GKGCMC	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	187, 394
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	291, 294
BlsI	GCNGC	2 cut(s)	292, 295
BmcAI	AGTACT	1 cut(s)	36
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	2 cut(s)	130, 263
Bsa29I	ATCGAT	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	25, 254
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	280
BshVI	ATCGAT	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	46, 337
BspACI	CCGC	2 cut(s)	127, 291
BspCNI	CTCAG	2 cut(s)	24, 255
BspDI	ATCGAT	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	46, 337
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	11, 130, 263, 396
BstKTI	GATC	2 cut(s)	49, 340
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	46, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	354
CciI	TCATGA	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	4, 35, 135
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	10, 146, 206, 261, 267, 290, 380
CviKI_1	RGCY	7 cut(s)	10, 146, 206, 261, 267, 290, 380
CviQI	GTAC	3 cut(s)	4, 35, 135
DdeI	CTNAG	4 cut(s)	11, 130, 263, 396
DpnI	GATC	2 cut(s)	48, 339
DpnII	GATC	2 cut(s)	46, 337
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	1 cut(s)	116
FaiI	YATR	9 cut(s)	89, 114, 170, 234, 280, 282, 314, 320, 345
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	291, 294
Fsp4HI	GCNGC	2 cut(s)	291, 294
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	291, 294
GsuI	CTGGAG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	70, 352
Hpy188I	TCNGA	2 cut(s)	14, 175
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	2 cut(s)	70, 352
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	11, 130, 263, 396
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 337
LguI	GCTCTTC	1 cut(s)	387
LpnPI	CCDG	3 cut(s)	23, 275, 362
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	307
MalI	GATC	2 cut(s)	48, 339
MboI	GATC	2 cut(s)	46, 337
MboII	GAAGA	2 cut(s)	155, 374
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	116, 159, 315
MseI	TTAA	2 cut(s)	228, 269
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	2 cut(s)	46, 337
NlaIII	CATG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	292, 295
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	308
PspCI	CACGTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	5, 36, 136
RsaNI	GTAC	3 cut(s)	4, 35, 135
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	228, 269
SatI	GCNGC	2 cut(s)	291, 294
Sau3AI	GATC	2 cut(s)	46, 337
ScaI	AGTACT	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	12, 136, 148, 208, 213, 269, 310, 391
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	116, 159, 315
SsiI	CCGC	2 cut(s)	127, 291
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	116, 159, 315
TatI	WGTACW	2 cut(s)	3, 34
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	228, 269
Tru9I	TTAA	2 cut(s)	228, 269
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	76, 129, 297, 360
TspGWI	ACGGA	2 cut(s)	361, 397
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	2 cut(s)	116, 159
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.