Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

38927085 .. 38928488

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTTACTGCAAGTTGTCAATCTGTTAGTGTTTCCCCAAATGATAACCAAAATCCTGTACCACCAGTAGGTAACTTACCACCAGTAGATAATAGTACCCCAAACTTAGATCCCACTCCAACCCCAACTGAAACACCAAATCCAAATCCTGAATCGGTGGAAGCTAGTGCAGGGCTGGGGAAAAGAAAGGGTAGGAAACAGAGTCGAGTATGGGAGTGTTTTACAAGGCCTTTGCTCCCTGATGGCAAGCCTGACCCACAGAATGCACAATGCAACTACTGTAAAGCATTAGGTCCTGCTTTAAGTTCAAAGAATGGAACCAGTTCTTGCTGGTCACATGGAAGAAACTGCAAGGTTAACCCTCTATTTGAGAAACCAATCGAGAAAGGGCAGACTATATTAGCTAGGGATAATGTTTCTGGGGCTCCACAATATCACAGATTTAATCAGGGTAGGATAGATGAGAAGTTCGACTGGAAATTGCACAAAAGGATTATTAACTTTGGTTCAATCACCGCTGTTGCTCGGCTCGCTGCGGCGAATGGTGATGGTGATTATGCTTTTGAGCTGGTGAAGGGTATGGAGAAGTATAATGTATTGCCGATGTTGCGCACTTGCGATCCGGCATTGTTTGGCTTTTGCGAGAAACTGGAGGCTGATAAGGCGTATGAGGTGGAAGAGTATATGAATAAGGTGGGAGTGAGTGTAGAAGAGCCTGAGATTGCAGCCTTATTAAAGGTGAGTGCAGAGACAGGAAGAGGGGAGAGGGTTTATGATTACTTGCACAAGTTGAGGAATGCTGTGAGGTGTGTTCATGAATCGACGACCAAGATCATTGAGGATTGGTATCGTGATGGAAGGGCTAGTGAAGTGGGTGAGGTGAATTGGGACTCGGGTAGGGTCAAAGAGGCGGTTTTGAGGAATGGAGGAGGGTGGCATGGGCAGGGGTGGGTTGGGAAGGGGGATTGGTCTGTGCAGAGAGCCAATGTGGATTCTGACAGCAGGTGTTGCTCCTGTGGTGAGCATTTGGTTTTTTCTTCCACCTCATACGCCTTATCAGCCTCCAGTTTCTCGCAAAAGCCAAACAATGCCGGATCGCAAGTGCGCAACCTCGGCAATACATTATACTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

379

Amino Acids

41.51

Weight (kDa)

7.5

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	169 - 289	6.8e-47	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	993
Acc16I	TGCGCA	2 cut(s)	611, 1106
Acc36I	ACCTGC	1 cut(s)	993
AciI	CCGC	3 cut(s)	516, 536, 911
AclWI	GGATC	3 cut(s)	104, 614, 1102
AfaI	GTAC	2 cut(s)	60, 97
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	309, 510
AluBI	AGCT	3 cut(s)	164, 404, 568
AluI	AGCT	3 cut(s)	164, 404, 568
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	3 cut(s)	104, 614, 1102
Ama87I	CYCGRG	1 cut(s)	892
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	533, 725
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	612, 1107
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	8 cut(s)	505, 557, 563, 583, 751, 887, 892, 1031
AvaI	CYCGRG	1 cut(s)	892
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	520, 737
BccI	CCATC	3 cut(s)	236, 542, 848
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	3 cut(s)	165, 405, 864
BfuAI	ACCTGC	1 cut(s)	993
BisI	GCNGC	3 cut(s)	534, 537, 726
BlsI	GCNGC	3 cut(s)	535, 538, 727
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	892
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	319, 426
BpmI	CTGGAG	2 cut(s)	671, 1048
BsaBI	GATNNNNATC	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	1111
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	6 cut(s)	65, 83, 321, 479, 654, 1065
Bse8I	GATNNNNATC	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	1111
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	6 cut(s)	65, 83, 321, 479, 654, 1065
BseRI	GAGGAG	1 cut(s)	942
BseXI	GCAGC	2 cut(s)	520, 737
BseYI	CCCAGC	1 cut(s)	175
BsgI	GTGCAG	3 cut(s)	189, 765, 995
BshFI	GGCC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	892
BsiSI	CCGG	2 cut(s)	623, 1092
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	902
BsmI	GAATGC	2 cut(s)	268, 802
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	892
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	109, 619, 831, 1094
BspACI	CCGC	3 cut(s)	516, 536, 911
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	709
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	319, 426
BspMI	ACCTGC	1 cut(s)	993
BspPI	GGATC	3 cut(s)	104, 614, 1102
BspQI	GCTCTTC	1 cut(s)	705
BsrI	ACTGG	6 cut(s)	65, 83, 321, 479, 654, 1065
BssECI	CCNNGG	1 cut(s)	1111
BssMI	GATC	4 cut(s)	109, 619, 831, 1094
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	3 cut(s)	672, 705, 751
BstAPI	GCANNNNNTGC	1 cut(s)	1008
BstC8I	GCNNGC	2 cut(s)	248, 531
BstDEI	CTNAG	2 cut(s)	106, 717
BstHHI	GCGC	2 cut(s)	612, 1107
BstKTI	GATC	4 cut(s)	112, 622, 834, 1097
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	4 cut(s)	109, 619, 831, 1094
BstMWI	GCNNNNNNNGC	6 cut(s)	530, 607, 662, 1008, 1058, 1113
BstV1I	GCAGC	2 cut(s)	520, 737
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	993
Cac8I	GCNNGC	2 cut(s)	248, 531
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	2 cut(s)	612, 1107
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	59, 96
CviAII	CATG	3 cut(s)	338, 815, 938
CviQI	GTAC	2 cut(s)	59, 96
DdeI	CTNAG	2 cut(s)	106, 717
DpnI	GATC	4 cut(s)	111, 621, 833, 1096
DpnII	GATC	4 cut(s)	109, 619, 831, 1094
Eam1104I	CTCTTC	3 cut(s)	672, 705, 751
EarI	CTCTTC	3 cut(s)	672, 705, 751
Eco147I	AGGCCT	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	3 cut(s)	341, 818, 941
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	3 cut(s)	337, 814, 937
Fnu4HI	GCNGC	3 cut(s)	534, 537, 726
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	3 cut(s)	534, 537, 726
FspBI	CTAG	3 cut(s)	165, 405, 864
FspI	TGCGCA	2 cut(s)	611, 1106
GlaI	GCGC	2 cut(s)	611, 1106
GluI	GCNGC	3 cut(s)	534, 537, 726
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	2 cut(s)	671, 1048
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	2 cut(s)	623, 1092
HhaI	GCGC	2 cut(s)	612, 1107
Hin1II	CATG	3 cut(s)	341, 818, 941
Hin6I	GCGC	2 cut(s)	610, 1105
HinP1I	GCGC	2 cut(s)	610, 1105
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	5 cut(s)	152, 202, 818, 890, 992
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	2 cut(s)	623, 1092
HphI	GGTGA	8 cut(s)	505, 557, 563, 583, 751, 887, 892, 1031
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	997
Hpy188III	TCNNGA	4 cut(s)	149, 382, 815, 851
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	826
HpyAV	CCTTC	3 cut(s)	568, 852, 952
HpyCH4III	ACNGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	530, 607, 662, 1008, 1058, 1113
HpyF3I	CTNAG	2 cut(s)	106, 717
Hsp92II	CATG	3 cut(s)	341, 818, 941
HspAI	GCGC	2 cut(s)	610, 1105
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	109, 619, 831, 1094
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	240, 430, 1016
Lsp1109I	GCAGC	2 cut(s)	520, 737
MaeI	CTAG	3 cut(s)	165, 405, 864
MaeIII	GTNAC	3 cut(s)	4, 71, 333
MalI	GATC	4 cut(s)	111, 621, 833, 1096
MboI	GATC	4 cut(s)	109, 619, 831, 1094
MboII	GAAGA	5 cut(s)	354, 689, 722, 768, 1029
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	2 cut(s)	479, 883
MlyI	GAGTC	2 cut(s)	211, 884
MmeI	TCCRAC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	5 cut(s)	302, 357, 444, 498, 734
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	2 cut(s)	623, 1092
Mva1269I	GAATGC	2 cut(s)	268, 802
MwoI	GCNNNNNNNGC	6 cut(s)	530, 607, 662, 1008, 1058, 1113
NdeII	GATC	4 cut(s)	109, 619, 831, 1094
NlaIII	CATG	3 cut(s)	341, 818, 941
NlaIV	GGNNCC	2 cut(s)	319, 426
NmeAIII	GCCGAG	2 cut(s)	505, 1092
NmuCI	GTSAC	1 cut(s)	333
NsbI	TGCGCA	2 cut(s)	611, 1106
PagI	TCATGA	1 cut(s)	814
PaqCI	CACCTGC	1 cut(s)	993
PceI	AGGCCT	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	2 cut(s)	268, 802
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	152, 818, 992
PkrI	GCNGC	3 cut(s)	535, 538, 727
PleI	GAGTC	2 cut(s)	210, 884
PpsI	GAGTC	2 cut(s)	210, 884
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	319, 426
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	60, 97
RsaNI	GTAC	2 cut(s)	59, 96
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	5 cut(s)	302, 357, 444, 498, 734
SatI	GCNGC	3 cut(s)	534, 537, 726
Sau3AI	GATC	4 cut(s)	109, 619, 831, 1094
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	211, 884
SduI	GDGCHC	1 cut(s)	427
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	2 cut(s)	479, 883
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	516, 536, 911
SspMI	CTAG	3 cut(s)	165, 405, 864
StuI	AGGCCT	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	4 cut(s)	205, 381, 471, 821
TasI	AATT	2 cut(s)	479, 883
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	3 cut(s)	152, 818, 992
Tru1I	TTAA	5 cut(s)	302, 357, 444, 498, 734
Tru9I	TTAA	5 cut(s)	302, 357, 444, 498, 734
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	2 cut(s)	533, 725
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	701, 803, 831
VpaK11BI	GGWCC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	3 cut(s)	165, 405, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.