Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Forward (+)

37869 .. 38639

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001738.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgggtactcaaagtggtaatttgagtcagactagtagctcaagcccttcgattagttctagcatacatgtgacgggtagtgcagctttggatcattcccctttaggacaaccacctttaggacaaccaactttaggacaaccaccaccagctttaggacaaacactcccacctttagggcaaacttcaggttcagttgatgaagctgatcctaccaactcccaatcccatggagcagctactgctgggcagaaaagaaaagagactgcaaacaaaagccctctttgggcacatttcactagatgtaaacacccgaactcagacctaatagatacttgttggtgtacctgcaattattgcaatgacagagtgttatgtgatactaaaaggaatgggacaagctcaatgtgggcacatactaggaaatgtgctactcgcccattacatgaagaacctgatcctaagcaggctaagttgaatagagataatgtgagtggaggagcctcataccataagtataacaaaaagaggtgtgatgataggtgcatcaatctgattatcaaggatgagctcccttttaggcacgtggagaaggagggattcaaagctttctgcaaagagttagaacctcaatggcctggaatggacagaaagcaggctgccaagggtgtgctagataagtacaattttgagaaggctgttttgttgagtcaattgaaggcaaatgaaactcggatctcaattaccaccgacacctggacatcgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

256

Amino Acids

28.1

Weight (kDa)

8.77

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AclWI	GGATC	4 cut(s)	99, 203, 452, 743
AcuI	CTGAAG	1 cut(s)	171
AcvI	CACGTG	1 cut(s)	586
AfaI	GTAC	3 cut(s)	7, 346, 683
AfiI	CCNNNNNNNGG	6 cut(s)	119, 134, 155, 176, 286, 756
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	478, 604, 718
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	637, 755
AluBI	AGCT	8 cut(s)	39, 86, 152, 206, 239, 402, 571, 608
AluI	AGCT	8 cut(s)	39, 86, 152, 206, 239, 402, 571, 608
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	4 cut(s)	99, 203, 452, 743
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	3 cut(s)	83, 236, 659
BaeGI	GKGCMC	2 cut(s)	292, 415
BanII	GRGCYC	1 cut(s)	573
BbrPI	CACGTG	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	95, 248, 646
BciT130I	CCWGG	2 cut(s)	639, 757
BcoDI	GTCTC	1 cut(s)	257
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	6 cut(s)	33, 60, 300, 420, 674, 769
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	3 cut(s)	84, 237, 660
BlsI	GCNGC	3 cut(s)	85, 238, 661
Bme1390I	CCNGG	2 cut(s)	639, 757
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	639, 757
BmsI	GCATC	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	2 cut(s)	229, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 134, 155, 176, 286, 756
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	639, 757
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	229, 663
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	6 cut(s)	119, 134, 155, 176, 286, 756
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	513
BseSI	GKGCMC	2 cut(s)	292, 415
BseXI	GCAGC	3 cut(s)	95, 248, 646
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	6 cut(s)	119, 134, 155, 176, 286, 756
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	3 cut(s)	292, 415, 573
Bsp143I	GATC	5 cut(s)	91, 208, 457, 735, 765
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	1 cut(s)	332
BspDI	ATCGAT	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	4 cut(s)	99, 203, 452, 743
BsrDI	GCAATG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	229, 663
BssMI	GATC	5 cut(s)	91, 208, 457, 735, 765
BssT1I	CCWWGG	2 cut(s)	229, 663
Bst2UI	CCWGG	2 cut(s)	639, 757
BstAPI	GCANNNNNTGC	2 cut(s)	242, 357
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	2 cut(s)	468, 657
BstDEI	CTNAG	3 cut(s)	319, 462, 471
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	5 cut(s)	94, 211, 460, 738, 768
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	5 cut(s)	91, 208, 457, 735, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 357
BstNI	CCWGG	2 cut(s)	639, 757
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	637, 755
BstSLI	GKGCMC	2 cut(s)	292, 415
BstV1I	GCAGC	3 cut(s)	95, 248, 646
BstX2I	RGATCY	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	735
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	571
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	468, 657
CaiI	CAGNNNCTG	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	6, 345, 682
CviAII	CATG	3 cut(s)	68, 230, 446
CviQI	GTAC	3 cut(s)	6, 345, 682
DdeI	CTNAG	3 cut(s)	319, 462, 471
DpnI	GATC	5 cut(s)	93, 210, 459, 737, 767
DpnII	GATC	5 cut(s)	91, 208, 457, 735, 765
Ecl136II	GAGCTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	229, 663
Eco24I	GRGCYC	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	637, 755
EcoT14I	CCWWGG	2 cut(s)	229, 663
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	229, 663
FaeI	CATG	3 cut(s)	71, 233, 449
FaiI	YATR	9 cut(s)	65, 69, 231, 376, 417, 447, 508, 513, 519
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	67, 229, 445
Fnu4HI	GCNGC	3 cut(s)	84, 237, 660
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	3 cut(s)	84, 237, 660
FspBI	CTAG	6 cut(s)	33, 60, 300, 420, 674, 769
GluI	GCNGC	3 cut(s)	84, 237, 660
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	71, 233, 449
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	3 cut(s)	25, 600, 709
Hpy166II	GTNNAC	2 cut(s)	308, 345
Hpy188I	TCNGA	4 cut(s)	30, 322, 555, 735
Hpy8I	GTNNAC	2 cut(s)	308, 345
HpyAV	CCTTC	4 cut(s)	57, 586, 688, 712
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	6 cut(s)	83, 269, 351, 360, 546, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 357
HpyF3I	CTNAG	3 cut(s)	319, 462, 471
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	71, 233, 449
Kzo9I	GATC	5 cut(s)	91, 208, 457, 735, 765
LmnI	GCTCC	3 cut(s)	233, 500, 576
Lsp1109I	GCAGC	3 cut(s)	95, 248, 646
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	6 cut(s)	33, 60, 300, 420, 674, 769
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	93, 210, 459, 737, 767
MboI	GATC	5 cut(s)	91, 208, 457, 735, 765
MboII	GAAGA	1 cut(s)	461
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	3 cut(s)	292, 415, 573
MluCI	AATT	5 cut(s)	19, 352, 685, 713, 741
MlyI	GAGTC	2 cut(s)	34, 718
MnlI	CCTC	6 cut(s)	291, 491, 514, 522, 589, 639
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	639, 757
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	639, 757
MwoI	GCNNNNNNNGC	2 cut(s)	242, 357
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	5 cut(s)	91, 208, 457, 735, 765
NlaIII	CATG	3 cut(s)	71, 233, 449
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	85, 238, 661
PleI	GAGTC	2 cut(s)	33, 717
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
PpsI	GAGTC	2 cut(s)	33, 717
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	637, 755
PspCI	CACGTG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	2 cut(s)	637, 755
PspN4I	GGNNCC	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	3 cut(s)	7, 346, 683
RsaNI	GTAC	3 cut(s)	6, 345, 682
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	573
SatI	GCNGC	3 cut(s)	84, 237, 660
Sau3AI	GATC	5 cut(s)	91, 208, 457, 735, 765
SchI	GAGTC	2 cut(s)	34, 718
ScrFI	CCNGG	2 cut(s)	639, 757
SduI	GDGCHC	3 cut(s)	292, 415, 573
SfaNI	GCATC	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	5 cut(s)	19, 352, 685, 713, 741
SspMI	CTAG	6 cut(s)	33, 60, 300, 420, 674, 769
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	637, 755
StyI	CCWWGG	2 cut(s)	229, 663
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	50, 764
TasI	AATT	5 cut(s)	19, 352, 685, 713, 741
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	600
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	83, 236, 659
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	216, 462, 741
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	6 cut(s)	33, 60, 300, 420, 674, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.