Rh7CG276500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001336
Physical Location & Seq
Forward (+)
27745979 .. 27746185
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG276500.1

Sequence Viewer

Length: 207 bp
ATGGTGGCCTTTGATGCAAGTGGCGCCGGAGTCGCGAGTTTGGCCGCTCTTACTGGAGGCACTAGCTGGCTGGGCTGCTCAGAAGCGCTGGTGTCGCAGCCGGAGTCATTGGATTGGATACTCGAAGCTGCTGGTTTCACTGTTAGGAGGAAGTTGGTTCGGTGGCCGTGCTGGGTGCGGACGACATCAATGTTGGGCGGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.1

Weight (kDa)

6.03

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 35
AciI CCGC 4 cut(s) 45, 178, 198, 201
AcoI YGGCCR 2 cut(s) 42, 164
AcyI GRCGYC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 87
AluBI AGCT 2 cut(s) 66, 128
AluI AGCT 2 cut(s) 66, 128
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 3 cut(s) 6, 42, 164
ApeKI GCWGC 3 cut(s) 75, 97, 128
AspLEI GCGC 2 cut(s) 26, 88
BanI GGYRCC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 62, 109, 115
BceAI ACGGC 1 cut(s) 151
BciVI GTATCC 1 cut(s) 111
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 2 cut(s) 27, 89
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 5 cut(s) 45, 76, 98, 129, 199
BlsI GCNGC 5 cut(s) 46, 77, 99, 130, 200
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 3 cut(s) 62, 109, 115
BseYI CCCAGC 2 cut(s) 70, 171
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 3 cut(s) 8, 44, 166
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 27, 101
BsnI GGCC 3 cut(s) 8, 44, 166
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 4 cut(s) 45, 178, 198, 201
BspANI GGCC 3 cut(s) 8, 44, 166
BspCNI CTCAG 1 cut(s) 92
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 2 cut(s) 27, 89
BstHHI GCGC 2 cut(s) 26, 88
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 32, 41, 72, 94
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 62, 109, 115
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 3 cut(s) 8, 44, 166
BtsIMutI CAGTG 1 cut(s) 138
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 68
CfoI GCGC 2 cut(s) 26, 88
CviJI RGCY 8 cut(s) 8, 44, 66, 70, 75, 100, 128, 166
CviKI_1 RGCY 8 cut(s) 8, 44, 66, 70, 75, 100, 128, 166
DdeI CTNAG 1 cut(s) 79
DinI GGCGCC 1 cut(s) 25
EaeI YGGCCR 2 cut(s) 42, 164
Eco47III AGCGCT 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 45, 76, 98, 129, 199
Fsp4HI GCNGC 5 cut(s) 45, 76, 98, 129, 199
FspBI CTAG 1 cut(s) 63
GlaI GCGC 2 cut(s) 25, 87
GluI GCNGC 5 cut(s) 45, 76, 98, 129, 199
GsaI CCCAGC 2 cut(s) 74, 175
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 27, 89
HaeIII GGCC 3 cut(s) 8, 44, 166
HapII CCGG 2 cut(s) 27, 101
HhaI GCGC 2 cut(s) 26, 88
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 2 cut(s) 24, 86
HinP1I GCGC 2 cut(s) 24, 86
HinfI GANTC 2 cut(s) 30, 104
HpaII CCGG 2 cut(s) 27, 101
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 32, 41, 72, 94
HpyF3I CTNAG 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 2 cut(s) 24, 86
KasI GGCGCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 39, 40, 52, 56, 74, 114, 117, 157
Lsp1109I GCAGC 3 cut(s) 62, 109, 115
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 47
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 2 cut(s) 39, 113
MnlI CCTC 2 cut(s) 50, 141
MspI CCGG 2 cut(s) 27, 101
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 32, 41, 72, 94
NarI GGCGCC 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 25
NruI TCGCGA 1 cut(s) 35
PkrI GCNGC 5 cut(s) 46, 77, 99, 130, 200
PleI GAGTC 2 cut(s) 38, 112
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 2 cut(s) 38, 112
PspFI CCCAGC 2 cut(s) 70, 171
PspN4I GGNNCC 1 cut(s) 25
RruI TCGCGA 1 cut(s) 35
SatI GCNGC 5 cut(s) 45, 76, 98, 129, 199
SchI GAGTC 2 cut(s) 39, 113
SetI ASST 2 cut(s) 68, 130
SfaNI GCATC 1 cut(s) 4
SfoI GGCGCC 1 cut(s) 25
SsiI CCGC 4 cut(s) 45, 178, 198, 201
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 123
TauI GCSGC 2 cut(s) 47, 201
TscAI CASTG 1 cut(s) 145
TseI GCWGC 3 cut(s) 75, 97, 128
TspRI CASTG 1 cut(s) 145
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.