Rroxscaffold_7G00210380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001336
Physical Location & Seq
Forward (+)
60736359 .. 60737561
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210380.1

Sequence Viewer

Length: 246 bp
ATGGCTCCATTCGGCTCGGCTACGGTATGCCATACACCATACCGTCGGTATACCATACCAACCGACAACCTTAATCACACCTCTACTTCATCTCCAGTTCAGCCTCCAAACCCCAACCCCAACCCTAACCCAAACCCCGACCCTAACCTAAATATCATCCCCGAAGTAGAGTCACGGTCGGTCCCAACCATTCCTACTAACGAAGGGCGGGATAATACATTGGCTGTTAGGGCAGGTGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.7

Weight (kDa)

6.0

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 50
AciI CCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 6, 183
BpmI CTGGAG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bse1I ACTGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
BspACI CCGC 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 6, 183
BspMI ACCTGC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 95
BssNAI GTATAC 1 cut(s) 51
Bst1107I GTATAC 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 25, 44, 177
BstF5I GGATG 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstZ17I GTATAC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 181
CviJI RGCY 5 cut(s) 5, 15, 20, 103, 224
CviKI_1 RGCY 5 cut(s) 5, 15, 20, 103, 224
Eco47I GGWCC 1 cut(s) 181
FaiI YATR 5 cut(s) 28, 33, 40, 51, 56
FaqI GGGAC 1 cut(s) 167
FauI CCCGC 1 cut(s) 201
FblI GTMKAC 1 cut(s) 50
FokI GGATG 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 78
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 25, 44, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 108, 219
MaeIII GTNAC 1 cut(s) 171
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 2 cut(s) 91, 114
MseI TTAA 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 6, 183
NmuCI GTSAC 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 6, 183
PspPI GGNCC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 179
SetI ASST 4 cut(s) 72, 83, 150, 238
SgeI CNNG 6 cut(s) 28, 107, 149, 173, 186, 221
SinI GGWCC 1 cut(s) 181
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 208
TaaI ACNGT 3 cut(s) 25, 44, 177
TaqII GACCGA 1 cut(s) 169
TasI AATT 1 cut(s) 241
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.