Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

155334 .. 156113

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005996.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgggtacagcaagttgtcaatcaataggtgttcccccaaataataaccaaaacactataccacctccacaaaacattacccctaactcagttcctattccaaccccaactaaaacaccaaatccagatcctcaatcggtagaagctactgcggggttggggaaaagaaggtgtcaagataagaccacaaagggtaggaaacagagtcgagtgtgggactgtttcacaaggcctttgctccctgatggcaagcctgaccccgataatgcacaatgtaattactgtaaagcaatagttcctgcatctagttcaaagaatggaaccagttcttgctggtcacatggaagaaattgcaaggttaaccctttatttgagaaacctattgagaaagggcagactatattatgtagggataatgtaaccggggctccacaatatcacaaatttaatcaaggtaggatagatgagaagctgtacaagatgatcataagggatgaacttccctttaggcatgtagagggttttgggtttaaagagtttttgtatgaagctcagccacagtggattcaaccaagtaggaagttagtggccaagggagtgtgggaattgtaccaatctgagaagggaaagatgatgtccatctttgctcagcatgcaaagagagttagtgtaaccactgacacttggacatcaattcagaacattaactacatggtggtcactgcccatttcatggacagcgactggaagttgcacaaaaggaatataaacttttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

259

Amino Acids

29.32

Weight (kDa)

9.39

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	733
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	3 cut(s)	7, 476, 611
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	312, 569
AluBI	AGCT	3 cut(s)	146, 472, 551
AluI	AGCT	3 cut(s)	146, 472, 551
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	744
AoxI	GGCC	2 cut(s)	230, 588
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	430
BccI	CCATC	2 cut(s)	239, 647
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	424
BfaI	CTAG	1 cut(s)	306
BlpI	GCTNAGC	2 cut(s)	552, 648
Bme1390I	CCNGG	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	322, 429
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	311
Bpu1102I	GCTNAGC	2 cut(s)	552, 648
BpuMI	CCSGG	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	2 cut(s)	423, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	2 cut(s)	324, 749
Bse8I	GATNNNNATC	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	423, 591
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	4 cut(s)	102, 566, 609, 662
BseNI	ACTGG	2 cut(s)	324, 749
BshFI	GGCC	2 cut(s)	232, 590
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	232, 590
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	127, 483
Bsp1720I	GCTNAGC	2 cut(s)	552, 648
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	2 cut(s)	232, 590
BspCNI	CTCAG	4 cut(s)	101, 565, 610, 661
BspLI	GGNNCC	2 cut(s)	322, 429
BspPI	GGATC	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	324, 749
BssECI	CCNNGG	2 cut(s)	423, 591
BssMI	GATC	2 cut(s)	127, 483
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	221, 284, 561
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	251, 654
BstDEI	CTNAG	4 cut(s)	88, 552, 618, 648
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	2 cut(s)	130, 486
BstMBI	GATC	2 cut(s)	127, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNSI	RCATGY	2 cut(s)	515, 656
BstSCI	CCNGG	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	232, 590
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	3 cut(s)	566, 675, 720
Cac8I	GCNNGC	2 cut(s)	251, 654
CaiI	CAGNNNCTG	1 cut(s)	744
Csp6I	GTAC	3 cut(s)	6, 475, 610
CviAII	CATG	5 cut(s)	341, 512, 653, 712, 733
CviJI	RGCY	8 cut(s)	146, 232, 253, 428, 472, 551, 556, 590
CviKI_1	RGCY	8 cut(s)	146, 232, 253, 428, 472, 551, 556, 590
CviQI	GTAC	3 cut(s)	6, 475, 610
DdeI	CTNAG	4 cut(s)	88, 552, 618, 648
DpnI	GATC	2 cut(s)	129, 485
DpnII	GATC	2 cut(s)	127, 483
DraI	TTTAAA	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	344, 515, 656, 715, 736
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	5 cut(s)	340, 511, 652, 711, 732
FauI	CCCGC	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	483
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	430
FspBI	CTAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	232, 590
HapII	CCGG	1 cut(s)	423
Hin1II	CATG	5 cut(s)	344, 515, 656, 715, 736
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	205, 565
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	619, 699
Hpy188III	TCNNGA	2 cut(s)	125, 176
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	162, 616
HpyCH4III	ACNGT	3 cut(s)	221, 284, 561
HpyCH4V	TGCA	5 cut(s)	269, 302, 354, 656, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	4 cut(s)	88, 552, 618, 648
Hsp92II	CATG	5 cut(s)	344, 515, 656, 715, 736
Ksp22I	TGATCA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	127, 483
LmnI	GCTCC	2 cut(s)	243, 433
LpnPI	CCDG	8 cut(s)	138, 255, 267, 312, 319, 337, 436, 730
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	4 cut(s)	336, 418, 670, 718
MalI	GATC	2 cut(s)	129, 485
MboI	GATC	2 cut(s)	127, 483
MboII	GAAGA	1 cut(s)	357
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	430
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	5 cut(s)	277, 349, 443, 605, 693
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	75, 141, 511
Mox20I	TGGCCA	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	5 cut(s)	360, 447, 531, 705, 778
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	2 cut(s)	127, 483
NlaIII	CATG	5 cut(s)	344, 515, 656, 715, 736
NlaIV	GGNNCC	2 cut(s)	322, 429
NmuCI	GTSAC	2 cut(s)	336, 718
NspI	RCATGY	2 cut(s)	515, 656
PaeI	GCATGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	733
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	322, 429
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PstNI	CAGNNNCTG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	3 cut(s)	7, 476, 611
RsaNI	GTAC	3 cut(s)	6, 475, 610
SaqAI	TTAA	5 cut(s)	360, 447, 531, 705, 778
Sau3AI	GATC	2 cut(s)	127, 483
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	9 cut(s)	31, 67, 148, 173, 360, 382, 457, 474, 553
SfaNI	GCATC	1 cut(s)	311
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	5 cut(s)	277, 349, 443, 605, 693
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	221, 284, 561
TaqI	TCGA	1 cut(s)	208
TasI	AATT	5 cut(s)	277, 349, 443, 605, 693
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	5 cut(s)	360, 447, 531, 705, 778
Tru9I	TTAA	5 cut(s)	360, 447, 531, 705, 778
TscAI	CASTG	3 cut(s)	566, 682, 727
TseFI	GTSAC	2 cut(s)	336, 718
Tsp45I	GTSAC	2 cut(s)	336, 718
TspDTI	ATGAA	3 cut(s)	510, 561, 721
TspRI	CASTG	3 cut(s)	566, 682, 727
Van91I	CCANNNNNTGG	1 cut(s)	733
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	2 cut(s)	515, 656
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.