Rmu_sc0002885.1_g000004

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002885.1
OG0001336
Physical Location & Seq
Forward (+)
24501 .. 28010
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002885.1_g000004.1.cds

Sequence Viewer

Length: 1335 bp
atgaagttgggaaatgttgtgcaagttgcaactcaattaccacacatctgtgaccctaccaacatcaaatgggaaccagttgcggttttggaaactagaatggttaaaaggagaggttggtcaaaggtcggtggaggtgttagtgctaccacgtcgaggttgcggaatggtggatatgtagattttgcggacgtcggcgacagtgcagttgaccccaggtcggggaagggtggtggtaccgctgcagctcttgatctaagtaatgctaggactggttcgggtctgaatccttctagtggttctgggcttcgggccatagttgttggtcgtggccgggctttgggccttggtgtttgggctggcttaaaatgccggagctaccgaaaccggccggaaaccggccgaaccgccgttgtcggcgccgagaaaagtggtagccgaaggtccggttcggttctgccgaaccgtatatacgtagccggctcggtaacgaccatggcttctacaagtaggtcaggaagtcattgttgttcatccccttccataacttctaacatgggtacagcaagttgtcaatcaataggtgttcccccaaataataaccaaaacactataccacctccacaaaacattacccctaactcagttcctattccaaccccaactaaaacaccaaatccagatcctcaatcggtagaagctactgcggggttggggaaaagaaggtgtcaagataagaccacaaagggtaggaaacagagtcgagtgtgggactgtttcacaaggcctttgctccctgatggcaagcctgaccccgataatgcacaatgtaattactgtaaagcaatagttcctgcatctagttcaaagaatggaaccagttcttgctggtcacatggaagaaattgcaaggttaaccctttatttgagaaacctattgagaaagggcagactatattatgtagggataatgtaaccggggctccacaatatcacaaatttaatcaaggtaggatagatgagaagctgtacaagatgatcataagggatgaacttccctttaggcatgtagagggttttgggtttaaagagtttttgtatgaagctcagccacagtggattcaaccaagtaggaagttagtggccaagggagtgtgggaattgtaccaatctgagaagggaaagatgatgtccatctttgctcagcatgcaaagagagttagtgtaaccactgacacttggacatcaattcagaacattaactacatggtggtcactgcccatttcatggacagcgactggaagttgcacaaaaggaatataaacttttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

444

Amino Acids

48.35

Weight (kDa)

9.84

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 236, 419
AccB7I CCANNNNNTGG 1 cut(s) 1288
AciI CCGC 6 cut(s) 83, 163, 188, 240, 408, 707
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 4 cut(s) 331, 389, 400, 1143
AcsI RAATTY 1 cut(s) 998
AcyI GRCGYC 2 cut(s) 192, 420
AfaI GTAC 4 cut(s) 238, 562, 1031, 1166
AfiI CCNNNNNNNGG 8 cut(s) 156, 220, 221, 222, 296, 340, 398, 1288
AgsI TTSAA 2 cut(s) 867, 1124
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 153
AjnI CCWGG 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 5 cut(s) 248, 378, 701, 1027, 1106
AluI AGCT 5 cut(s) 248, 378, 701, 1027, 1106
AlwI GGATC 1 cut(s) 677
AlwNI CAGNNNCTG 1 cut(s) 1299
AoxI GGCC 7 cut(s) 312, 331, 343, 389, 400, 785, 1143
ApeKI GCWGC 2 cut(s) 242, 245
ApoI RAATTY 1 cut(s) 998
Asp700I GAANNNNTTC 1 cut(s) 880
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 3 cut(s) 312, 343, 444
AsuC2I CCSGG 2 cut(s) 335, 979
AvaII GGWCC 1 cut(s) 444
BalI TGGCCA 1 cut(s) 1145
BanI GGYRCC 2 cut(s) 236, 419
BanII GRGCYC 1 cut(s) 985
BbvI GCAGC 2 cut(s) 229, 257
BccI CCATC 2 cut(s) 794, 1202
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 217
BclI TGATCA 1 cut(s) 1038
BcnI CCSGG 2 cut(s) 335, 979
BfaI CTAG 4 cut(s) 96, 267, 294, 861
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 2 cut(s) 243, 246
BlpI GCTNAGC 2 cut(s) 1107, 1203
BlsI GCNGC 2 cut(s) 244, 247
Bme1390I CCNGG 3 cut(s) 217, 335, 979
Bme18I GGWCC 1 cut(s) 444
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 312, 343, 444
BmiI GGNNCC 5 cut(s) 75, 238, 421, 877, 984
BmrFI CCNGG 3 cut(s) 217, 335, 979
BmsI GCATC 1 cut(s) 866
Bpu1102I GCTNAGC 2 cut(s) 1107, 1203
BpuMI CCSGG 2 cut(s) 335, 979
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 1193
BsaHI GRCGYC 2 cut(s) 192, 420
BsaJI CCNNGG 5 cut(s) 215, 346, 495, 978, 1146
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 967, 997
Bsc4I CCNNNNNNNGG 8 cut(s) 156, 220, 221, 222, 296, 340, 398, 1288
Bse118I RCCGGY 3 cut(s) 387, 398, 479
Bse1I ACTGG 4 cut(s) 77, 277, 879, 1304
Bse8I GATNNNNATC 1 cut(s) 1193
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 5 cut(s) 215, 346, 495, 978, 1146
BseGI GGATG 2 cut(s) 533, 1054
BseJI GATNNNNATC 1 cut(s) 1193
BseLI CCNNNNNNNGG 8 cut(s) 156, 220, 221, 222, 296, 340, 398, 1288
BseMII CTCAG 4 cut(s) 657, 1121, 1164, 1217
BseNI ACTGG 4 cut(s) 77, 277, 879, 1304
BseX3I CGGCCG 2 cut(s) 389, 400
BseXI GCAGC 2 cut(s) 229, 257
BsgI GTGCAG 1 cut(s) 225
Bsh1285I CGRYCG 2 cut(s) 392, 403
BshFI GGCC 7 cut(s) 314, 333, 345, 391, 402, 787, 1145
BshNI GGYRCC 2 cut(s) 236, 419
BsiEI CGRYCG 2 cut(s) 392, 403
BsiSI CCGG 8 cut(s) 334, 373, 388, 392, 399, 447, 480, 978
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 8 cut(s) 156, 220, 221, 222, 296, 340, 398, 1288
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 7 cut(s) 314, 333, 345, 391, 402, 787, 1145
Bsp1286I GDGCHC 1 cut(s) 985
Bsp1407I TGTACA 1 cut(s) 1029
Bsp143I GATC 3 cut(s) 253, 682, 1038
Bsp1720I GCTNAGC 2 cut(s) 1107, 1203
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 6 cut(s) 83, 163, 188, 240, 408, 707
BspANI GGCC 7 cut(s) 314, 333, 345, 391, 402, 787, 1145
BspCNI CTCAG 4 cut(s) 656, 1120, 1165, 1216
BspLI GGNNCC 5 cut(s) 75, 238, 421, 877, 984
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 2 cut(s) 236, 419
BsrFI RCCGGY 3 cut(s) 387, 398, 479
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 4 cut(s) 77, 277, 879, 1304
BssAI RCCGGY 3 cut(s) 387, 398, 479
BssECI CCNNGG 5 cut(s) 215, 346, 495, 978, 1146
BssMI GATC 3 cut(s) 253, 682, 1038
BssNI GRCGYC 2 cut(s) 192, 420
BssT1I CCWWGG 3 cut(s) 346, 495, 1146
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 5 cut(s) 203, 467, 776, 839, 1116
BstACI GRCGYC 2 cut(s) 192, 420
BstAUI TGTACA 1 cut(s) 1029
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 361, 481, 806, 1209
BstDEI CTNAG 5 cut(s) 257, 643, 1107, 1173, 1203
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 533, 1054
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 256, 685, 1041
BstMBI GATC 3 cut(s) 253, 682, 1038
BstMCI CGRYCG 2 cut(s) 392, 403
BstMWI GCNNNNNNNGC 2 cut(s) 369, 1208
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 1070, 1211
BstSCI CCNGG 3 cut(s) 215, 333, 977
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 229, 257
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BstZI CGGCCG 2 cut(s) 389, 400
BsuRI GGCC 7 cut(s) 314, 333, 345, 391, 402, 787, 1145
BtgI CCRYGG 1 cut(s) 495
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 533, 1054
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 4 cut(s) 208, 1121, 1230, 1275
Cac8I GCNNGC 4 cut(s) 361, 481, 806, 1209
CaiI CAGNNNCTG 1 cut(s) 1299
CfoI GCGC 1 cut(s) 422
Cfr10I RCCGGY 3 cut(s) 387, 398, 479
Cfr13I GGNCC 3 cut(s) 312, 343, 444
Csp6I GTAC 4 cut(s) 237, 561, 1030, 1165
CviAII CATG 7 cut(s) 496, 556, 896, 1067, 1208, 1267, 1288
CviQI GTAC 4 cut(s) 237, 561, 1030, 1165
DdeI CTNAG 5 cut(s) 257, 643, 1107, 1173, 1203
DinI GGCGCC 1 cut(s) 421
DpnI GATC 3 cut(s) 255, 684, 1040
DpnII GATC 3 cut(s) 253, 682, 1038
DraI TTTAAA 1 cut(s) 1087
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 4 cut(s) 331, 389, 400, 1143
EagI CGGCCG 2 cut(s) 389, 400
Eam1105I GACNNNNNGTC 1 cut(s) 217
EclXI CGGCCG 2 cut(s) 389, 400
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 346, 495, 1146
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 985
Eco47I GGWCC 1 cut(s) 444
Eco52I CGGCCG 2 cut(s) 389, 400
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 346, 495, 1146
EcoT38I GRGCYC 1 cut(s) 985
EgeI GGCGCC 1 cut(s) 421
EheI GGCGCC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 346, 495, 1146
FaeI CATG 7 cut(s) 499, 559, 899, 1070, 1211, 1270, 1291
FaqI GGGAC 1 cut(s) 785
FatI CATG 7 cut(s) 495, 555, 895, 1066, 1207, 1266, 1287
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 1038
Fnu4HI GCNGC 2 cut(s) 243, 246
FokI GGATG 2 cut(s) 520, 1061
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 2 cut(s) 243, 246
FspBI CTAG 4 cut(s) 96, 267, 294, 861
GlaI GCGC 1 cut(s) 421
GluI GCNGC 2 cut(s) 243, 246
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 7 cut(s) 314, 333, 345, 391, 402, 787, 1145
HapII CCGG 8 cut(s) 334, 373, 388, 392, 399, 447, 480, 978
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 2 cut(s) 192, 420
Hin1II CATG 7 cut(s) 499, 559, 899, 1070, 1211, 1270, 1291
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 2 cut(s) 211, 916
HindII GTYRAC 2 cut(s) 211, 916
HinfI GANTC 3 cut(s) 286, 760, 1120
HpaI GTTAAC 1 cut(s) 916
HpaII CCGG 8 cut(s) 334, 373, 388, 392, 399, 447, 480, 978
Hpy166II GTNNAC 2 cut(s) 211, 916
Hpy188I TCNGA 3 cut(s) 285, 1174, 1254
Hpy188III TCNNGA 4 cut(s) 251, 516, 680, 731
Hpy8I GTNNAC 2 cut(s) 211, 916
Hpy99I CGWCG 2 cut(s) 157, 197
HpyAV CCTTC 6 cut(s) 220, 300, 435, 549, 717, 1171
HpyCH4III ACNGT 5 cut(s) 203, 467, 776, 839, 1116
HpyCH4IV ACGT 3 cut(s) 152, 192, 474
HpyCH4V TGCA 9 cut(s) 22, 29, 206, 245, 824, 857, 909, 1211, 1309
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 1208
HpyF3I CTNAG 5 cut(s) 257, 643, 1107, 1173, 1203
HpySE526I ACGT 3 cut(s) 152, 192, 474
Hsp92I GRCGYC 2 cut(s) 192, 420
Hsp92II CATG 7 cut(s) 499, 559, 899, 1070, 1211, 1270, 1291
HspAI GCGC 1 cut(s) 420
KasI GGCGCC 1 cut(s) 419
KpnI GGTACC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 1038
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 253, 682, 1038
LmnI GCTCC 3 cut(s) 375, 798, 988
Lsp1109I GCAGC 2 cut(s) 229, 257
LweI GCATC 1 cut(s) 866
MaeI CTAG 4 cut(s) 96, 267, 294, 861
MaeII ACGT 3 cut(s) 152, 192, 474
MaeIII GTNAC 6 cut(s) 50, 487, 891, 973, 1225, 1273
MalI GATC 3 cut(s) 255, 684, 1040
MboI GATC 3 cut(s) 253, 682, 1038
MboII GAAGA 1 cut(s) 912
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 1 cut(s) 985
MlsI TGGCCA 1 cut(s) 1145
MluCI AATT 6 cut(s) 35, 832, 904, 998, 1160, 1248
MluNI TGGCCA 1 cut(s) 1145
Mly113I GGCGCC 1 cut(s) 420
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 680
MnlI CCTC 6 cut(s) 107, 128, 150, 630, 696, 1066
Mox20I TGGCCA 1 cut(s) 1145
MroNI GCCGGC 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 880
MscI TGGCCA 1 cut(s) 1145
MseI TTAA 7 cut(s) 105, 365, 915, 1002, 1086, 1260, 1333
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 1145
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 8 cut(s) 334, 373, 388, 392, 399, 447, 480, 978
MspR9I CCNGG 3 cut(s) 217, 335, 979
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 369, 1208
NaeI GCCGGC 1 cut(s) 481
NarI GGCGCC 1 cut(s) 420
NciI CCSGG 2 cut(s) 335, 979
NcoI CCATGG 1 cut(s) 495
NdeII GATC 3 cut(s) 253, 682, 1038
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 7 cut(s) 499, 559, 899, 1070, 1211, 1270, 1291
NlaIV GGNNCC 5 cut(s) 75, 238, 421, 877, 984
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 3 cut(s) 50, 891, 1273
NspI RCATGY 2 cut(s) 1070, 1211
OliI CACNNNNGTG 1 cut(s) 48
PaeI GCATGC 1 cut(s) 1211
PceI AGGCCT 1 cut(s) 787
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 2 cut(s) 286, 1120
PflMI CCANNNNNTGG 1 cut(s) 1288
PkrI GCNGC 2 cut(s) 244, 247
PleI GAGTC 1 cut(s) 768
PluTI GGCGCC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 768
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 5 cut(s) 75, 238, 421, 877, 984
PspPI GGNCC 3 cut(s) 312, 343, 444
PsrI GAACNNNNNNTAC 4 cut(s) 455, 487, 1247, 1279
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 1299
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 4 cut(s) 238, 562, 1031, 1166
RsaNI GTAC 4 cut(s) 237, 561, 1030, 1165
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 7 cut(s) 105, 365, 915, 1002, 1086, 1260, 1333
SatI GCNGC 2 cut(s) 243, 246
Sau3AI GATC 3 cut(s) 253, 682, 1038
Sau96I GGNCC 3 cut(s) 312, 343, 444
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 3 cut(s) 217, 335, 979
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 1 cut(s) 866
SfcI CTRYAG 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 421
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 48
SnaBI TACGTA 1 cut(s) 475
SphI GCATGC 1 cut(s) 1211
Sse9I AATT 6 cut(s) 35, 832, 904, 998, 1160, 1248
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 6 cut(s) 83, 163, 188, 240, 408, 707
SspDI GGCGCC 1 cut(s) 419
SspMI CTAG 4 cut(s) 96, 267, 294, 861
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 3 cut(s) 215, 333, 977
StyI CCWWGG 3 cut(s) 346, 495, 1146
TaaI ACNGT 5 cut(s) 203, 467, 776, 839, 1116
TaiI ACGT 3 cut(s) 155, 195, 477
TaqI TCGA 2 cut(s) 155, 763
TasI AATT 6 cut(s) 35, 832, 904, 998, 1160, 1248
TatI WGTACW 1 cut(s) 1029
TfiI GAWTC 2 cut(s) 286, 1120
Tru1I TTAA 7 cut(s) 105, 365, 915, 1002, 1086, 1260, 1333
Tru9I TTAA 7 cut(s) 105, 365, 915, 1002, 1086, 1260, 1333
TscAI CASTG 4 cut(s) 208, 1121, 1237, 1282
TseFI GTSAC 3 cut(s) 50, 891, 1273
TseI GCWGC 2 cut(s) 242, 245
Tsp45I GTSAC 3 cut(s) 50, 891, 1273
TspDTI ATGAA 5 cut(s) 17, 522, 1065, 1116, 1276
TspRI CASTG 4 cut(s) 208, 1121, 1237, 1282
Van91I CCANNNNNTGG 1 cut(s) 1288
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 998
XceI RCATGY 2 cut(s) 1070, 1211
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 4 cut(s) 96, 267, 294, 861
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.