Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001336

Physical Location & Seq

Genomic Coordinates Reverse (-)

22986703 .. 22987236

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGGTTACATGCTAAGAAAGTGGTAAGAAAAGGGAATAAAGGTCAAAAAATTCACCTTGCAATTTGCTCACATTGCAAGAAAGTGTGTCTGGCCGATCCTAATAAAAATGGGACATCAAACATAATGTATCACCTTAGAAATGTTTGTAAGGATTCACCTCTTTATATAAAAGGTGATAAAAATCAACCGGTCTTAACAAATGAGTCCATGGGTAGTGGATTGGTCCCCTGCTCCTTTAACCAAAAGAGACTTGAGTTAAAGGTTGTGATGTTTCTTATCAAAGATGAACAACCATTTAAGGTGGTTGAAGATGGTGGATATATTGATATGATGAAAGAGGCTCAATCTCGGTTCAAGATTCTAAATAGGAGGAAGATTGCAGCCGGTGTGTGGGATTTGTTTGTAATAGAGAAGTCTAAATTGTTTGAAGCTATGCATAATCAAAGGGTAAGTATCACAACCGATACTTGGACATCAATTCAAAACATCAACTACATGGTAGTTACCGCCCACTTCATGGATAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

178

Amino Acids

20.32

Weight (kDa)

9.45

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001336)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25742 FvH4_6g20421
pyrus_communis	pycom05g20100 pycom11g13300
rosa_chinensis	RchiOBHm_Chr2g0102801 RchiOBHm_Chr2g0136641 RchiOBHm_Chr2g0154011 RchiOBHm_Chr5g0006251 RchiOBHm_Chr5g0052451 RchiOBHm_Chr7g0199701
rosa_laevigata	RLG00000006084 RLG00000012510 RLG00000012676 RLG00000019816 RLG00000034232 RLG00000034234 RLG00000034714 RLG00000035988 RLG00000036228
rosa_multiflora	Rmu_co8336117.1_g000001 Rmu_sc0000344.1_g000001 Rmu_sc0000899.1_g000001 Rmu_sc0001153.1_g000001 Rmu_sc0001501.1_g000021 Rmu_sc0001738.1_g000014 Rmu_sc0002402.1_g000002 Rmu_sc0002480.1_g000015 Rmu_sc0002885.1_g000004 Rmu_sc0005996.1_g000032 Rmu_sc0006458.1_g000010 Rmu_sc0012624.1_g000001 Rmu_sc0013184.1_g000003 Rmu_sc0041192.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027780 Rroxscaffold_1G00055130 Rroxscaffold_4G00305320 Rroxscaffold_7G00190260 Rroxscaffold_7G00210380
rosa_rugosa	Rorug05G0269100 Rorug05G0324900
rosa_samantha	Rh1BG037500 Rh3CG170900 Rh3CG263300 Rh3DG302000 Rh4BG221700 Rh5AG145200 Rh5AG179700 Rh5CG344300 Rh7AG471400 Rh7BG274800 Rh7BG358400 Rh7BG399400 Rh7CG276500
rosa_wichuraiana	Rw1G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	520
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	393, 471, 520
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	311, 358, 431, 485
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	51
AsiGI	ACCGGT	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	4 cut(s)	47, 125, 150, 188
AvaII	GGWCC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 471, 520
Bse118I	RCCGGY	2 cut(s)	190, 386
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	393, 471, 520
BseMI	GCAATG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	191, 387
BslFI	GGGAC	2 cut(s)	127, 212
BslI	CCNNNNNNNGG	3 cut(s)	393, 471, 520
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	127, 212
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	2 cut(s)	190, 386
BssAI	RCCGGY	2 cut(s)	190, 386
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	15, 137
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	210
Cfr10I	RCCGGY	2 cut(s)	190, 386
Cfr13I	GGNCC	1 cut(s)	226
CspAI	ACCGGT	1 cut(s)	190
CviAII	CATG	4 cut(s)	11, 211, 499, 520
CviJI	RGCY	4 cut(s)	95, 344, 386, 434
CviKI_1	RGCY	4 cut(s)	95, 344, 386, 434
DdeI	CTNAG	2 cut(s)	15, 137
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	14, 214, 502, 523
FaqI	GGGAC	2 cut(s)	127, 212
FatI	CATG	4 cut(s)	10, 210, 498, 519
Fnu4HI	GCNGC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	191, 387
Hin1II	CATG	4 cut(s)	14, 214, 502, 523
HinfI	GANTC	3 cut(s)	155, 206, 361
HpaII	CCGG	2 cut(s)	191, 387
HphI	GGTGA	4 cut(s)	47, 125, 150, 188
Hpy188III	TCNNGA	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	62, 78, 383, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	15, 137
Hsp92II	CATG	4 cut(s)	14, 214, 502, 523
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	77, 204, 244, 400
Lsp1109I	GCAGC	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	6, 505
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	323, 388
MluCI	AATT	4 cut(s)	51, 63, 422, 480
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	171, 334, 366
Mph1103I	ATGCAT	1 cut(s)	441
MseI	TTAA	4 cut(s)	197, 240, 260, 300
MspI	CCGG	2 cut(s)	191, 387
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	14, 214, 502, 523
NlaIV	GGNNCC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	155, 361
PflMI	CCANNNNNTGG	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	226
SaqAI	TTAA	4 cut(s)	197, 240, 260, 300
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	215
SetI	ASST	8 cut(s)	46, 60, 138, 163, 178, 267, 306, 436
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	51, 63, 422, 480
SsiI	CCGC	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	210
TasI	AATT	4 cut(s)	51, 63, 422, 480
TfiI	GAWTC	2 cut(s)	155, 361
Tru1I	TTAA	4 cut(s)	197, 240, 260, 300
Tru9I	TTAA	4 cut(s)	197, 240, 260, 300
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	303, 350, 508
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.